# HG changeset patch
# User iuc
# Date 1670323131 0
# Node ID f6b8b38636a43ad9151e4f77b0f4119a7d3a93c3
# Parent add230dddd52b0fab9a8c3d8fbe55b618a62bf92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit cd9d5f90669555dc06b2467043c01846cd8c4078
diff -r add230dddd52 -r f6b8b38636a4 arriba.xml
--- a/arriba.xml Mon Sep 26 09:32:30 2022 +0000
+++ b/arriba.xml Tue Dec 06 10:38:51 2022 +0000
@@ -154,7 +154,7 @@
$options.duplicate_marking
$options.fill_discarded_columns
$options.fill_the_gaps
-#if str($visualization.do_viz) == "yes"
+#if $output_fusion_bams or str($visualization.do_viz) == "yes"
&& samtools sort -@ \${GALAXY_SLOTS:-1} -m 4G -T tmp -O bam '$input' > Aligned.sortedByCoord.out.bam
&& samtools index Aligned.sortedByCoord.out.bam
#end if
@@ -441,16 +441,13 @@
output_fusion_bams == True
-
- input_params['input_source'] == "use_fastq"
-
visualization['do_viz'] == "yes"
-
+
@@ -472,7 +469,7 @@
-
+
diff -r add230dddd52 -r f6b8b38636a4 macros.xml
--- a/macros.xml Mon Sep 26 09:32:30 2022 +0000
+++ b/macros.xml Tue Dec 06 10:38:51 2022 +0000
@@ -1,6 +1,6 @@
2.3.0
- 2
+ 3
arriba