Mercurial > repos > iuc > arriba_draw_fusions

comparison macros.xml @ 4:31f8063eedea draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 7943aa76786271a466aa1b0e2c8fac3f32176863
author iuc
date Fri, 24 Mar 2023 08:12:37 +0000
parents 765e685641ce
children cf01dd6c6b1f
comparison
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3:765e685641ce 4:31f8063eedea
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">2.3.0</token> 2 <token name="@TOOL_VERSION@">2.4.0</token>
3 <token name="@VERSION_SUFFIX@">3</token> 3 <token name="@VERSION_SUFFIX@">0</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">arriba</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">arriba</requirement>
7 <yield/> 7 <yield/>
8 </requirements> 8 </requirements>
78 which reflect the actual isoforms involved in a fusion. 78 which reflect the actual isoforms involved in a fusion.
79 \ As a third option, the transcripts that are annotated as canonical can be drawn. 79 \ As a third option, the transcripts that are annotated as canonical can be drawn.
80 Transcript isoforms tagged with appris_principal, appris_candidate, or CCDS are considered canonical. 80 Transcript isoforms tagged with appris_principal, appris_candidate, or CCDS are considered canonical.
81 </help> 81 </help>
82 <option value="coverage">coverage</option> 82 <option value="coverage">coverage</option>
83 <option value="provided">provided</option> 83 <option value="provided" selected="true">provided</option>
84 <option value="canonical">canonical</option> 84 <option value="canonical">canonical</option>
85 </param> 85 </param>
86 <param argument="--minConfidenceForCircosPlot" type="select" optional="true" label="Transcript selection"> 86 <param argument="--minConfidenceForCircosPlot" type="select" optional="true" label="Transcript selection">
87 <help>The fusion of interest is drawn as a solid line in the circos plot. 87 <help>The fusion of interest is drawn as a solid line in the circos plot.
88 To give an impression of the overall degree of rearrangement, 88 To give an impression of the overall degree of rearrangement,