Mercurial > repos > iuc > arriba_draw_fusions

diff macros.xml @ 5:cf01dd6c6b1f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 3a528b3f87cff585baf4abb8ebe0be95a24044ea
author iuc
date Wed, 25 Oct 2023 08:24:28 +0000
parents 31f8063eedea
children 7acb00fc980a
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--- a/macros.xml	Fri Mar 24 08:12:37 2023 +0000
+++ b/macros.xml	Wed Oct 25 08:24:28 2023 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">2.4.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <xml name="requirements">
         <requirements>
         <requirement type="package" version="@TOOL_VERSION@">arriba</requirement>
@@ -53,7 +53,7 @@
         ln -sf '$genome.assembly' $genome_assembly &&
     #end if
 #elif str($genome.genome_source) == "cached"
-    #set $genome_assembly = $genome.ref_file.fields.fasta
+    #set $genome_assembly = $genome.ref_file.fields.path
 #end if
     ]]></token>
     <token name="@GTF_SOURCE@"><![CDATA[
@@ -63,7 +63,7 @@
     ]]></token>
 
     <xml name="visualization_options">
-                <param name="cytobands" argument="--cytobands" type="data" format="tabular" optional="true" label="Cytobands"/>
+                <param argument="--cytobands" type="data" format="tabular" optional="true" label="Cytobands"/>
                 <section name="options" expanded="false" title="Draw Fusion Options">
                     <param argument="--sampleName" type="text" value="" optional="true" label="Sample Name printed as the title on every page"/>
                     <param argument="--transcriptSelection" type="select" optional="true" label="Transcript selection">