Mercurial > repos > iuc > arriba_draw_fusions

changeset 1:cf18a5993aa2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 5def6a1b52ea9116547b5fd953a45b9ef85a011f
author iuc
date Fri, 23 Sep 2022 13:49:22 +0000
parents 2d4e3aff9dc7
children 68ff8cd874db
files macros.xml
diffstat 1 files changed, 2 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Jul 27 11:25:43 2022 +0000
+++ b/macros.xml	Fri Sep 23 13:49:22 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">2.3.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <xml name="requirements">
         <requirements>
         <requirement type="package" version="@TOOL_VERSION@">arriba</requirement>
@@ -58,12 +58,7 @@
     ]]></token>
     <token name="@GTF_SOURCE@"><![CDATA[
 #if str($genome_gtf.gtf_source) == "history"
-    #if $genome_gtf.annotation.is_of_type('gtf.gz')
-        #set $genome_annotation = 'genome.gtf.gz'
-    #else
-        #set $genome_annotation = 'genome.gtf'
-    #end if
-    ln -sf '$genome_gtf.annotation' $genome_annotation &&
+    ln -sf '$genome_gtf.annotation' genome.gtf &&
 #end if
     ]]></token>
 
@@ -300,7 +295,6 @@
     #if str($visualization.options.pdfHeight)
         --pdfHeight=$visualization.options.pdfHeight
     #end if
-    # fontFamily
     #if $visualization.options.fontFamily
         --fontFamily=$visualization.options.fontFamily
     #end if