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comparison art_454.xml @ 3:bb7e0ccc0029 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 4f3b019991c8a322870d1130a7c0a34d5c09758f
author iuc
date Tue, 28 Jun 2016 11:32:19 -0400
parents a12ce5668966
children
comparison
equal deleted inserted replaced
2:7a12314c5b64 3:bb7e0ccc0029
108 <test> 108 <test>
109 <param name="rndSeed" value="42" /> 109 <param name="rndSeed" value="42" />
110 <param name="input_seq_file" value="input.fa" /> 110 <param name="input_seq_file" value="input.fa" />
111 <param name="fold_coverage" value="20" /> 111 <param name="fold_coverage" value="20" />
112 <param name="choice" value="single_end" /> 112 <param name="choice" value="single_end" />
113 <output name="output_fq1_single" file="art.454.01.fq" /> 113 <output name="output_fq1_single" file="art.454.01.fq" compare="sim_size" delta="5000" />
114 </test> 114 </test>
115 <test> 115 <test>
116 <param name="rndSeed" value="42" /> 116 <param name="rndSeed" value="42" />
117 <param name="input_seq_file" value="input.fa" /> 117 <param name="input_seq_file" value="input.fa" />
118 <param name="fold_coverage" value="20" /> 118 <param name="fold_coverage" value="20" />
119 <param name="choice" value="single_end" /> 119 <param name="choice" value="single_end" />
120 <param name="sam" value="True" /> 120 <param name="sam" value="True" />
121 <output name="output_fq1_single" file="art.454.01.fq" /> 121 <output name="output_fq1_single" file="art.454.01.fq" compare="sim_size" delta="5000" />
122 <output name="output_sam" file="art.454.01.sam" lines_diff="2"/> 122 <output name="output_sam" file="art.454.01.sam" compare="sim_size" delta="5000"/>
123 </test> 123 </test>
124 <!-- Paired End tests --> 124 <!-- Paired End tests -->
125 <test> 125 <test>
126 <param name="rndSeed" value="42" /> 126 <param name="rndSeed" value="42" />
127 <param name="input_seq_file" value="input.fa" /> 127 <param name="input_seq_file" value="input.fa" />
128 <param name="fold_coverage" value="20" /> 128 <param name="fold_coverage" value="20" />
129 <param name="choice" value="paired_end" /> 129 <param name="choice" value="paired_end" />
130 <param name="fragment_size" value="105" /> 130 <param name="fragment_size" value="105" />
131 <param name="fragment_sd" value="5" /> 131 <param name="fragment_sd" value="5" />
132 <param name="sam" value="True" /> 132 <param name="sam" value="True" />
133 <output name="output_fq1_paired" file="art.454.021.fq" /> 133 <output name="output_fq1_paired" file="art.454.021.fq" compare="sim_size" delta="5000" />
134 <output name="output_fq2_paired" file="art.454.022.fq" /> 134 <output name="output_fq2_paired" file="art.454.022.fq" compare="sim_size" delta="5000" />
135 <output name="output_sam" file="art.454.02.sam" lines_diff="2"/> 135 <output name="output_sam" file="art.454.02.sam" compare="sim_size" delta="5000"/>
136 </test> 136 </test>
137 </tests> 137 </tests>
138 <help><![CDATA[ 138 <help><![CDATA[
139 Art 454 Pyrosequencing Simulator 139 Art 454 Pyrosequencing Simulator
140 ================================ 140 ================================