Mercurial > repos > iuc > art

comparison art_illumina.xml @ 3:bb7e0ccc0029 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 4f3b019991c8a322870d1130a7c0a34d5c09758f
author iuc
date Tue, 28 Jun 2016 11:32:19 -0400
parents a12ce5668966
children
comparison
equal deleted inserted replaced
2:7a12314c5b64 3:bb7e0ccc0029
114 <param name="read_length" value="200" /> 114 <param name="read_length" value="200" />
115 <param name="choice" value="single_end" /> 115 <param name="choice" value="single_end" />
116 <param name="aln" value="True" /> 116 <param name="aln" value="True" />
117 <param name="sam" value="True" /> 117 <param name="sam" value="True" />
118 118
119 <output name="output_fq1_single" file="art.illumina.01.fq" /> 119 <output name="output_fq1_single" file="art.illumina.01.fq" compare="sim_size" delta="5000" />
120 <output name="output_aln1_single" file="art.illumina.01.aln" lines_diff="2"/> 120 <output name="output_aln1_single" file="art.illumina.01.aln" compare="sim_size" delta="5000"/>
121 <output name="output_sam" file="art.illumina.01.sam" lines_diff="2"/> 121 <output name="output_sam" file="art.illumina.01.sam" compare="sim_size" delta="5000"/>
122 </test> 122 </test>
123 <test> 123 <test>
124 <param name="rndSeed" value="42" /> 124 <param name="rndSeed" value="42" />
125 <param name="input_seq_file" value="input.fa" /> 125 <param name="input_seq_file" value="input.fa" />
126 <param name="fold_coverage" value="20" /> 126 <param name="fold_coverage" value="20" />
129 <param name="fragment_size" value="300" /> 129 <param name="fragment_size" value="300" />
130 <param name="fragment_sd" value="10" /> 130 <param name="fragment_sd" value="10" />
131 <param name="aln" value="True" /> 131 <param name="aln" value="True" />
132 <param name="sam" value="True" /> 132 <param name="sam" value="True" />
133 133
134 <output name="output_fq1_paired" file="art.illumina.021.fq" /> 134 <output name="output_fq1_paired" file="art.illumina.021.fq" compare="sim_size" delta="5000" />
135 <output name="output_fq2_paired" file="art.illumina.022.fq" /> 135 <output name="output_fq2_paired" file="art.illumina.022.fq" compare="sim_size" delta="5000" />
136 <output name="output_aln1_paired" file="art.illumina.021.aln" lines_diff="2"/> 136 <output name="output_aln1_paired" file="art.illumina.021.aln" compare="sim_size" delta="5000"/>
137 <output name="output_aln2_paired" file="art.illumina.022.aln" lines_diff="2"/> 137 <output name="output_aln2_paired" file="art.illumina.022.aln" compare="sim_size" delta="5000"/>
138 <output name="output_sam" file="art.illumina.02.sam" lines_diff="2"/> 138 <output name="output_sam" file="art.illumina.02.sam" compare="sim_size" delta="5000"/>
139 </test> 139 </test>
140 </tests> 140 </tests>
141 <help><![CDATA[ 141 <help><![CDATA[
142 Art Illumina Simulator 142 Art Illumina Simulator
143 ====================== 143 ======================