Mercurial > repos > iuc > art
view macros.xml @ 5:ff8599e52a55 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 1626a4a0313ab6363a214932e6dcd6f54f6ad6cf
author | iuc |
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date | Thu, 11 Apr 2019 03:22:40 -0400 |
parents | 531ff1d417b6 |
children | 5c265c4835c0 |
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<macros> <token name="@WRAPPER_VERSION@">3.19.15</token> <xml name="requirements"> <requirements> <requirement type="package" version="3.19.15">art</requirement> <yield/> </requirements> </xml> <xml name="stdio"> <stdio> <!-- Anything other than zero is an error --> <exit_code range="1:" /> <exit_code range=":-1" /> <!-- In case the return code has not been set propery check stderr too --> <regex match="Error:" /> <regex match="Exception:" /> </stdio> </xml> <xml name="aln"> <param name="aln" argument="-a" type="boolean" truevalue="-a" falsevalue="" label="Output ALN alignment file" /> </xml> <xml name="sam"> <param name="sam" argument="-s" type="boolean" truevalue="-s" falsevalue="" label="Output SAM alignment file" /> </xml> <xml name="rndSeed"> <param name="rndSeed" argument="-r" type="integer" value="-1" optional="true" label="Fixed random seed for the simulation" help="Use -1 to request a random seed" /> </xml> <xml name="citation"> <citations> <citation type="doi">10.1093/bioinformatics/btr708</citation> </citations> </xml> <xml name="amplicon"> <conditional name="amplicon"> <param name="use_amplicon" type="boolean" truevalue="amplicon_true" falsevalue="amplicon_false" label="Run Amplicon Sequencing Simulation" /> <when value="amplicon_true"> <param name="reads_per_amplicon" type="integer" value="0" label="Number of reads per amplicon (for 5'end amplicon sequencing)" /> </when> <when value="amplicon_false" /> </conditional> </xml> <xml name="amplicon_pair"> <conditional name="amplicon"> <param name="use_amplicon" type="boolean" truevalue="amplicon_true" falsevalue="amplicon_false" label="Run Amplicon Sequencing Simulation" /> <when value="amplicon_true"> <param name="read_pairs_per_amplicon" type="integer" value="0" label="Number of read pairs per amplicon (for two-end amplicon sequencing)" /> </when> <when value="amplicon_false" /> </conditional> </xml> <xml name="frag_len_sd"> <param name="fragment_size" type="integer" value="200" label="Average DNA fragment size" /> <param name="fragment_sd" type="integer" value="0" label="Standard deviation of the DNA fragment size" /> </xml> </macros>