Mercurial > repos > iuc > artic_minion
diff artic_minion.xml @ 4:a346730e5552 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 0c155c65c6499d62ce2ff020c1a904d6b959adb0"
| author | iuc |
|---|---|
| date | Fri, 09 Oct 2020 17:47:34 +0000 |
| parents | 94020e19b46c |
| children | 7a7d7f30ddfc |
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--- a/artic_minion.xml Tue Sep 29 20:20:01 2020 +0000 +++ b/artic_minion.xml Fri Oct 09 17:47:34 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="artic_minion" name="ARTIC minion" version="1.1.3+galaxy1"> +<tool id="artic_minion" name="ARTIC minion" version="1.1.3+galaxy2"> <description>Build consensus sequence and call variants from amplicon-based nanopore sequence data</description> <requirements> <requirement type="package" version="1.1.3">artic</requirement> @@ -77,7 +77,7 @@ <data name="alignment_report" format="tabular" from_work_dir="*.alignreport.txt" label="${tool.name} on ${on_string}: alignment report" /> <data name="variants_merged_vcf" format="vcf_bgzip" from_work_dir="*.merged.vcf.gz" label="${tool.name} on ${on_string}: medaka variant calls" /> <data name="variants_fail_vcf" format="vcf_bgzip" from_work_dir="*.fail.vcf.gz" label="${tool.name} on ${on_string}: variants fail" /> - <data name="variants_pass_vcf" format="vcf" from_work_dir="*.pass.vcf" label="${tool.name} on ${on_string}: variants pass" /> + <data name="variants_pass_vcf" format="vcf_bgzip" from_work_dir="*.pass.vcf.gz" label="${tool.name} on ${on_string}: variants pass" /> <data name="consensus_fasta" format="fasta" from_work_dir="*.consensus.fasta" label="${tool.name} on ${on_string}: consensus sequence" /> <data name="coverage_mask" format="tabular" from_work_dir="*.coverage_mask.txt" label="${tool.name} on ${on_string}: consensus coverage mask" /> <data name="analysis_log" format="txt" from_work_dir="*.minion.log.txt" label="${tool.name} on ${on_string}: analysis log" />