Mercurial > repos > iuc > bakta

comparison test-data/tmp/TEST_1/TEST_1.gbff @ 0:1a27ad3d0cdf draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
author iuc
date Thu, 01 Sep 2022 17:28:43 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:1a27ad3d0cdf
1 LOCUS contig_1 1330 bp DNA circular BCT 22-AUG-2022
2 DEFINITION plasmid unnamed1, complete sequence.
3 ACCESSION contig_1
4 VERSION contig_1
5 KEYWORDS .
6 SOURCE None
7 ORGANISM .
8 .
9 COMMENT Annotated with Bakta
10 Software: v1.4.2
11 Database: v3.0
12 DOI: 10.1099/mgen.0.000685
13 URL: github.com/oschwengers/bakta
14
15 ##Genome Annotation Summary:##
16 Annotation Date :: 08/22/2022, 12:57:48
17 Annotation Pipeline :: Bakta
18 Annotation Software version :: v1.4.2
19 Annotation Database version :: v3.0
20 CDSs :: 2
21 tRNAs :: 0
22 tmRNAs :: 0
23 rRNAs :: 0
24 ncRNAs :: 0
25 regulatory ncRNAs :: 0
26 CRISPR Arrays :: 0
27 oriCs/oriVs :: 0
28 oriTs :: 0
29 gaps :: 0
30 FEATURES Location/Qualifiers
31 source 1..1330
32 /mol_type="genomic DNA"
33 /plasmid="unnamed1"
34 gene 413..736
35 /locus_tag="IHHALP_00005"
36 CDS 413..736
37 /product="hypothetical protein"
38 /locus_tag="IHHALP_00005"
39 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
40 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
41 MAD"
42 /codon_start=1
43 /transl_table=11
44 /protein_id="gnl|Bakta|IHHALP_00005"
45 /inference="ab initio prediction:Prodigal:2.6"
46 gene complement(join(971..1330,1..141))
47 /locus_tag="IHHALP_00010"
48 CDS complement(join(971..1330,1..141))
49 /product="hypothetical protein"
50 /locus_tag="IHHALP_00010"
51 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
52 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
53 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
54 IPI"
55 /codon_start=1
56 /transl_table=11
57 /protein_id="gnl|Bakta|IHHALP_00010"
58 /inference="ab initio prediction:Prodigal:2.6"
59 ORIGIN
60 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
61 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
62 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
63 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
64 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
65 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
66 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
67 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
68 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
69 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
70 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
71 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
72 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
73 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
74 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
75 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
76 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
77 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
78 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
79 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
80 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
81 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
82 1321 cttctatttg
83 //