Mercurial > repos > iuc > bakta

comparison test-data/TEST_6/TEST_6.json @ 4:3f0aa1b3e816 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
author iuc
date Mon, 24 Jul 2023 11:22:16 +0000
parents
children 92eee5f31117
comparison
equal deleted inserted replaced
3:865ece5ca178 4:3f0aa1b3e816
1 {
2 "genome": {
3 "genus": null,
4 "species": null,
5 "strain": null,
6 "complete": true,
7 "gram": "?",
8 "translation_table": 11
9 },
10 "stats": {
11 "no_sequences": 1,
12 "size": 1330,
13 "gc": 0.4518796992481203,
14 "n_ratio": 0.0,
15 "n50": 1330,
16 "coding_ratio": 0.6203007518796992
17 },
18 "features": [
19 {
20 "type": "cds",
21 "contig": "contig_1",
22 "start": 413,
23 "stop": 736,
24 "strand": "+",
25 "gene": null,
26 "product": "hypothetical protein",
27 "start_type": "ATG",
28 "rbs_motif": "GGAG/GAGG",
29 "db_xrefs": [],
30 "frame": 2,
31 "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
32 "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e",
33 "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG",
34 "hypothetical": true,
35 "genes": [],
36 "seq_stats": {
37 "molecular_weight": 12072.90819999999,
38 "isoelectric_point": 10.367886161804197
39 },
40 "id": "IHHALPPJCH_1",
41 "locus": "IHHALP_00005"
42 },
43 {
44 "type": "cds",
45 "contig": "contig_1",
46 "start": 971,
47 "stop": 141,
48 "strand": "-",
49 "gene": null,
50 "product": "hypothetical protein",
51 "start_type": "ATG",
52 "rbs_motif": "AGGA/GGAG/GAGG",
53 "db_xrefs": [],
54 "frame": 1,
55 "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI",
56 "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584",
57 "edge": true,
58 "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA",
59 "hypothetical": true,
60 "genes": [],
61 "seq_stats": {
62 "molecular_weight": 18866.325799999995,
63 "isoelectric_point": 7.696590614318848
64 },
65 "id": "IHHALPPJCH_2",
66 "locus": "IHHALP_00010"
67 }
68 ],
69 "sequences": [
70 {
71 "id": "contig_1",
72 "description": "[gcode=11] [completeness=complete] [topology=circular] [plasmid-name=unnamed1]",
73 "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG",
74 "length": 1330,
75 "complete": true,
76 "type": "plasmid",
77 "topology": "circular",
78 "simple_id": "contig_1",
79 "orig_id": "NC_002127.1",
80 "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence",
81 "name": "unnamed1"
82 }
83 ],
84 "run": {
85 "start": "2023-06-19 09:31:32",
86 "end": "2023-06-19 09:31:33"
87 },
88 "version": {
89 "bakta": "1.8.1",
90 "db": {
91 "version": "5.0",
92 "type": "full"
93 }
94 }
95 }