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comparison test-data/TEST_6/TEST_6.json @ 6:92eee5f31117 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit fe9aabe924f278694d20b82169edacdb3e91eb49
author iuc
date Sun, 11 Feb 2024 00:56:12 +0000
parents 3f0aa1b3e816
children
comparison
equal deleted inserted replaced
5:728dacaf08a9 6:92eee5f31117
20 "type": "cds", 20 "type": "cds",
21 "contig": "contig_1", 21 "contig": "contig_1",
22 "start": 413, 22 "start": 413,
23 "stop": 736, 23 "stop": 736,
24 "strand": "+", 24 "strand": "+",
25 "frame": 2,
25 "gene": null, 26 "gene": null,
26 "product": "hypothetical protein", 27 "product": "hypothetical protein",
28 "db_xrefs": [],
29 "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG",
30 "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
31 "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e",
27 "start_type": "ATG", 32 "start_type": "ATG",
28 "rbs_motif": "GGAG/GAGG", 33 "rbs_motif": "GGAG/GAGG",
29 "db_xrefs": [],
30 "frame": 2,
31 "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
32 "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e",
33 "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG",
34 "hypothetical": true, 34 "hypothetical": true,
35 "genes": [], 35 "genes": [],
36 "seq_stats": { 36 "seq_stats": {
37 "molecular_weight": 12072.90819999999, 37 "molecular_weight": 12072.90819999999,
38 "isoelectric_point": 10.367886161804197 38 "isoelectric_point": 10.367886161804197
44 "type": "cds", 44 "type": "cds",
45 "contig": "contig_1", 45 "contig": "contig_1",
46 "start": 971, 46 "start": 971,
47 "stop": 141, 47 "stop": 141,
48 "strand": "-", 48 "strand": "-",
49 "frame": 1,
49 "gene": null, 50 "gene": null,
50 "product": "hypothetical protein", 51 "product": "hypothetical protein",
52 "db_xrefs": [],
53 "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA",
54 "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI",
55 "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584",
51 "start_type": "ATG", 56 "start_type": "ATG",
52 "rbs_motif": "AGGA/GGAG/GAGG", 57 "rbs_motif": "AGGA/GGAG/GAGG",
53 "db_xrefs": [],
54 "frame": 1,
55 "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI",
56 "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584",
57 "edge": true, 58 "edge": true,
58 "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA",
59 "hypothetical": true, 59 "hypothetical": true,
60 "genes": [], 60 "genes": [],
61 "seq_stats": { 61 "seq_stats": {
62 "molecular_weight": 18866.325799999995, 62 "molecular_weight": 18866.325799999995,
63 "isoelectric_point": 7.696590614318848 63 "isoelectric_point": 7.696590614318848
80 "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence", 80 "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence",
81 "name": "unnamed1" 81 "name": "unnamed1"
82 } 82 }
83 ], 83 ],
84 "run": { 84 "run": {
85 "start": "2023-06-19 09:31:32", 85 "start": "2024-02-11 00:27:31",
86 "end": "2023-06-19 09:31:33" 86 "end": "2024-02-11 00:27:43"
87 }, 87 },
88 "version": { 88 "version": {
89 "bakta": "1.8.1", 89 "bakta": "1.9.2",
90 "db": { 90 "db": {
91 "version": "5.0", 91 "version": "5.0",
92 "type": "full" 92 "type": "full"
93 } 93 }
94 } 94 }