Mercurial > repos > iuc > bakta
comparison test-data/TEST_4/TEST_4.embl @ 1:da5f1924bb2e draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 0ef6e6b2dcc9a41b32741368a60b931f31934686
author | iuc |
---|---|
date | Fri, 16 Sep 2022 13:42:15 +0000 |
parents | 1a27ad3d0cdf |
children |
comparison
equal
deleted
inserted
replaced
0:1a27ad3d0cdf | 1:da5f1924bb2e |
---|---|
6 XX | 6 XX |
7 OS . | 7 OS . |
8 OC . | 8 OC . |
9 XX | 9 XX |
10 CC Annotated with Bakta | 10 CC Annotated with Bakta |
11 CC Software: v1.4.2 | 11 CC Software: v1.5.0 |
12 CC Database: v3.0 | 12 CC Database: v4.0 |
13 CC DOI: 10.1099/mgen.0.000685 | 13 CC DOI: 10.1099/mgen.0.000685 |
14 CC URL: github.com/oschwengers/bakta | 14 CC URL: github.com/oschwengers/bakta |
15 CC | 15 CC |
16 CC ##Genome Annotation Summary:## | 16 CC ##Genome Annotation Summary:## |
17 CC Annotation Date :: 08/22/2022, 13:08:00 | 17 CC Annotation Date :: 09/16/2022, 07:32:50 |
18 CC Annotation Pipeline :: Bakta | 18 CC Annotation Pipeline :: Bakta |
19 CC Annotation Software version :: v1.4.2 | 19 CC Annotation Software version :: v1.5.0 |
20 CC Annotation Database version :: v3.0 | 20 CC Annotation Database version :: v4.0 |
21 CC CDSs :: 2 | 21 CC CDSs :: 2 |
22 CC tRNAs :: 0 | 22 CC tRNAs :: 0 |
23 CC tmRNAs :: 0 | 23 CC tmRNAs :: 0 |
24 CC rRNAs :: 0 | 24 CC rRNAs :: 0 |
25 CC ncRNAs :: 0 | 25 CC ncRNAs :: 0 |
26 CC regulatory ncRNAs :: 0 | 26 CC regulatory ncRNAs :: 0 |
27 CC CRISPR Arrays :: 0 | 27 CC CRISPR Arrays :: 0 |
28 CC oriCs/oriVs :: 0 | 28 CC oriCs/oriVs :: 0 |
29 CC oriTs :: 0 | 29 CC oriTs :: 0 |
30 CC gaps :: 0 | 30 CC gaps :: 0 |
31 CC pseudogenes :: 0 | |
31 XX | 32 XX |
32 FH Key Location/Qualifiers | 33 FH Key Location/Qualifiers |
33 FH | 34 FH |
34 FT source 1..1330 | 35 FT source 1..1330 |
35 FT /mol_type="genomic DNA" | 36 FT /mol_type="genomic DNA" |
37 FT gene 413..736 | 38 FT gene 413..736 |
38 FT /locus_tag="IHHALP_00005" | 39 FT /locus_tag="IHHALP_00005" |
39 FT CDS 413..736 | 40 FT CDS 413..736 |
40 FT /product="hypothetical protein" | 41 FT /product="hypothetical protein" |
41 FT /locus_tag="IHHALP_00005" | 42 FT /locus_tag="IHHALP_00005" |
43 FT /protein_id="gnl|Bakta|IHHALP_00005" | |
42 FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA | 44 FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA |
43 FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL | 45 FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL |
44 FT MAD" | 46 FT MAD" |
45 FT /codon_start=1 | 47 FT /codon_start=1 |
46 FT /transl_table=4 | 48 FT /transl_table=4 |
47 FT /protein_id="gnl|Bakta|IHHALP_00005" | |
48 FT /inference="ab initio prediction:Prodigal:2.6" | 49 FT /inference="ab initio prediction:Prodigal:2.6" |
49 FT gene complement(join(971..1330,1..141)) | 50 FT gene complement(join(971..1330,1..141)) |
50 FT /locus_tag="IHHALP_00010" | 51 FT /locus_tag="IHHALP_00010" |
51 FT CDS complement(join(971..1330,1..141)) | 52 FT CDS complement(join(971..1330,1..141)) |
52 FT /product="hypothetical protein" | 53 FT /product="hypothetical protein" |
53 FT /locus_tag="IHHALP_00010" | 54 FT /locus_tag="IHHALP_00010" |
55 FT /protein_id="gnl|Bakta|IHHALP_00010" | |
54 FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA | 56 FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA |
55 FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR | 57 FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR |
56 FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG | 58 FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG |
57 FT IPI" | 59 FT IPI" |
58 FT /codon_start=1 | 60 FT /codon_start=1 |
59 FT /transl_table=4 | 61 FT /transl_table=4 |
60 FT /protein_id="gnl|Bakta|IHHALP_00010" | |
61 FT /inference="ab initio prediction:Prodigal:2.6" | 62 FT /inference="ab initio prediction:Prodigal:2.6" |
62 XX | 63 XX |
63 SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other; | 64 SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other; |
64 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 | 65 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 |
65 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 | 66 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 |