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comparison test-data/TEST_4/TEST_4.gbff @ 1:da5f1924bb2e draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 0ef6e6b2dcc9a41b32741368a60b931f31934686
author iuc
date Fri, 16 Sep 2022 13:42:15 +0000
parents 1a27ad3d0cdf
children
comparison
equal deleted inserted replaced
0:1a27ad3d0cdf 1:da5f1924bb2e
1 LOCUS p2 1330 bp DNA circular BCT 22-AUG-2022 1 LOCUS p2 1330 bp DNA circular BCT 16-SEP-2022
2 DEFINITION plasmid pOSAK1, complete sequence. 2 DEFINITION plasmid pOSAK1, complete sequence.
3 ACCESSION p2 3 ACCESSION p2
4 VERSION p2 4 VERSION p2
5 KEYWORDS . 5 KEYWORDS .
6 SOURCE None 6 SOURCE None
7 ORGANISM . 7 ORGANISM .
8 . 8 .
9 COMMENT Annotated with Bakta 9 COMMENT Annotated with Bakta
10 Software: v1.4.2 10 Software: v1.5.0
11 Database: v3.0 11 Database: v4.0
12 DOI: 10.1099/mgen.0.000685 12 DOI: 10.1099/mgen.0.000685
13 URL: github.com/oschwengers/bakta 13 URL: github.com/oschwengers/bakta
14 14
15 ##Genome Annotation Summary:## 15 ##Genome Annotation Summary:##
16 Annotation Date :: 08/22/2022, 13:08:00 16 Annotation Date :: 09/16/2022, 07:32:50
17 Annotation Pipeline :: Bakta 17 Annotation Pipeline :: Bakta
18 Annotation Software version :: v1.4.2 18 Annotation Software version :: v1.5.0
19 Annotation Database version :: v3.0 19 Annotation Database version :: v4.0
20 CDSs :: 2 20 CDSs :: 2
21 tRNAs :: 0 21 tRNAs :: 0
22 tmRNAs :: 0 22 tmRNAs :: 0
23 rRNAs :: 0 23 rRNAs :: 0
24 ncRNAs :: 0 24 ncRNAs :: 0
25 regulatory ncRNAs :: 0 25 regulatory ncRNAs :: 0
26 CRISPR Arrays :: 0 26 CRISPR Arrays :: 0
27 oriCs/oriVs :: 0 27 oriCs/oriVs :: 0
28 oriTs :: 0 28 oriTs :: 0
29 gaps :: 0 29 gaps :: 0
30 pseudogenes :: 0
30 FEATURES Location/Qualifiers 31 FEATURES Location/Qualifiers
31 source 1..1330 32 source 1..1330
32 /mol_type="genomic DNA" 33 /mol_type="genomic DNA"
33 /plasmid="pOSAK1" 34 /plasmid="pOSAK1"
34 gene 413..736 35 gene 413..736
35 /locus_tag="IHHALP_00005" 36 /locus_tag="IHHALP_00005"
36 CDS 413..736 37 CDS 413..736
37 /product="hypothetical protein" 38 /product="hypothetical protein"
38 /locus_tag="IHHALP_00005" 39 /locus_tag="IHHALP_00005"
40 /protein_id="gnl|Bakta|IHHALP_00005"
39 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA 41 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
40 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL 42 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
41 MAD" 43 MAD"
42 /codon_start=1 44 /codon_start=1
43 /transl_table=4 45 /transl_table=4
44 /protein_id="gnl|Bakta|IHHALP_00005"
45 /inference="ab initio prediction:Prodigal:2.6" 46 /inference="ab initio prediction:Prodigal:2.6"
46 gene complement(join(971..1330,1..141)) 47 gene complement(join(971..1330,1..141))
47 /locus_tag="IHHALP_00010" 48 /locus_tag="IHHALP_00010"
48 CDS complement(join(971..1330,1..141)) 49 CDS complement(join(971..1330,1..141))
49 /product="hypothetical protein" 50 /product="hypothetical protein"
50 /locus_tag="IHHALP_00010" 51 /locus_tag="IHHALP_00010"
52 /protein_id="gnl|Bakta|IHHALP_00010"
51 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA 53 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
52 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR 54 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
53 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG 55 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
54 IPI" 56 IPI"
55 /codon_start=1 57 /codon_start=1
56 /transl_table=4 58 /transl_table=4
57 /protein_id="gnl|Bakta|IHHALP_00010"
58 /inference="ab initio prediction:Prodigal:2.6" 59 /inference="ab initio prediction:Prodigal:2.6"
59 ORIGIN 60 ORIGIN
60 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 61 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
61 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 62 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
62 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 63 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg