Mercurial > repos > iuc > bakta

diff test-data/TEST_1/TEST_1.json @ 0:1a27ad3d0cdf draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
author iuc
date Thu, 01 Sep 2022 17:28:43 +0000
parents
children da5f1924bb2e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/TEST_1.json	Thu Sep 01 17:28:43 2022 +0000
@@ -0,0 +1,90 @@
+{
+    "genome": {
+        "genus": null,
+        "species": null,
+        "strain": null,
+        "complete": true,
+        "gram": "?",
+        "translation_table": 11
+    },
+    "stats": {
+        "no_sequences": 1,
+        "size": 1330,
+        "gc": 0.4518796992481203,
+        "n_ratio": 0.0,
+        "n50": 1330,
+        "coding_ratio": 0.6203007518796992
+    },
+    "features": [
+        {
+            "type": "cds",
+            "contig": "contig_1",
+            "start": 413,
+            "stop": 736,
+            "strand": "+",
+            "gene": null,
+            "product": "hypothetical protein",
+            "start_type": "ATG",
+            "rbs_motif": "GGAG/GAGG",
+            "db_xrefs": [],
+            "frame": 2,
+            "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
+            "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e",
+            "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG",
+            "hypothetical": true,
+            "seq_stats": {
+                "molecular_weight": 12072.90819999999,
+                "isoelectric_point": 10.367886161804197
+            },
+            "id": "IHHALPPJCH_1",
+            "locus": "IHHALP_00005"
+        },
+        {
+            "type": "cds",
+            "contig": "contig_1",
+            "start": 971,
+            "stop": 141,
+            "strand": "-",
+            "gene": null,
+            "product": "hypothetical protein",
+            "start_type": "ATG",
+            "rbs_motif": "AGGA/GGAG/GAGG",
+            "db_xrefs": [],
+            "frame": 1,
+            "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI",
+            "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584",
+            "edge": true,
+            "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA",
+            "hypothetical": true,
+            "seq_stats": {
+                "molecular_weight": 18866.325799999995,
+                "isoelectric_point": 7.696590614318848
+            },
+            "id": "IHHALPPJCH_2",
+            "locus": "IHHALP_00010"
+        }
+    ],
+    "sequences": [
+        {
+            "id": "contig_1",
+            "description": "[completeness=complete] [topology=circular] [gcode=11]",
+            "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG",
+            "length": 1330,
+            "complete": true,
+            "type": "plasmid",
+            "topology": "circular",
+            "simple_id": "contig_1",
+            "orig_id": "NC_002127.1",
+            "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence",
+            "name": "unnamed1"
+        }
+    ],
+    "run": {
+        "start": "2022-08-22 13:06:53",
+        "end": "2022-08-22 13:06:54"
+    },
+    "version": {
+        "bakta": "1.4.2",
+        "db": "3.0"
+    }
+}
\ No newline at end of file