Mercurial > repos > iuc > bakta
diff bakta.xml @ 6:92eee5f31117 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit fe9aabe924f278694d20b82169edacdb3e91eb49
author | iuc |
---|---|
date | Sun, 11 Feb 2024 00:56:12 +0000 |
parents | 728dacaf08a9 |
children | ba6990f72184 |
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--- a/bakta.xml Sat Sep 16 09:01:39 2023 +0000 +++ b/bakta.xml Sun Feb 11 00:56:12 2024 +0000 @@ -70,6 +70,9 @@ #if $annotation.proteins --proteins '$annotation.proteins' #end if + #if $annotation.regions + --regions '$annotation.regions' + #end if #*====================================== Workflow OPTIONS skip some step of the bakta analysis @@ -132,6 +135,7 @@ <param argument="--compliant" type="boolean" truevalue="--compliant" falsevalue="" label="Force Genbank/ENA/DDJB compliance"/> <param argument="--proteins" type="data" format="fasta" optional="true" label="Protein fasta file" help="Fasta file of trusted protein sequences for CDS annotation"/> <param argument="--meta" type="boolean" truevalue="--meta" falsevalue="" label="Metagenome mode" help="Run in metagenome mode. This only affects CDS prediction"/> + <param argument="--regions" type="data" format="gff,genbank" optional="true" label="Pre-annotated regions" help="Regions only, no functional annotations."/> </section> <!-- PARAMETER FOR WORKFLOW ANALYSIS --> <section name="workflow" title="Workflow option to skip steps">