Mercurial > repos > iuc > bakta

diff test-data/TEST_2/TEST_2.gbff @ 1:da5f1924bb2e draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 0ef6e6b2dcc9a41b32741368a60b931f31934686
author iuc
date Fri, 16 Sep 2022 13:42:15 +0000
parents 1a27ad3d0cdf
children
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--- a/test-data/TEST_2/TEST_2.gbff	Thu Sep 01 17:28:43 2022 +0000
+++ b/test-data/TEST_2/TEST_2.gbff	Fri Sep 16 13:42:15 2022 +0000
@@ -1,4 +1,4 @@
-LOCUS       NC_002127.1             1330 bp    DNA     circular BCT 22-AUG-2022
+LOCUS       NC_002127.1             1330 bp    DNA     circular BCT 16-SEP-2022
 DEFINITION  Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence.
 ACCESSION   NC_002127
 VERSION     NC_002127.1
@@ -7,16 +7,16 @@
   ORGANISM  Escherichia coli o157:h7 Sakai
             .
 COMMENT     Annotated with Bakta
-            Software: v1.4.2
-            Database: v3.0
+            Software: v1.5.0
+            Database: v4.0
             DOI: 10.1099/mgen.0.000685
             URL: github.com/oschwengers/bakta
             
             ##Genome Annotation Summary:##
-            Annotation Date                :: 08/22/2022, 13:07:08
+            Annotation Date                :: 09/16/2022, 07:32:10
             Annotation Pipeline            :: Bakta
-            Annotation Software version    ::  v1.4.2
-            Annotation Database version    ::  v3.0
+            Annotation Software version    ::  v1.5.0
+            Annotation Database version    ::  v4.0
             CDSs                           ::     2
             tRNAs                          ::     0
             tmRNAs                         ::     0
@@ -27,6 +27,7 @@
             oriCs/oriVs                    ::     0
             oriTs                          ::     0
             gaps                           ::     0
+            pseudogenes                    ::     0
 FEATURES             Location/Qualifiers
      source          1..1330
                      /mol_type="genomic DNA"
@@ -38,25 +39,25 @@
      CDS             413..736
                      /product="hypothetical protein"
                      /locus_tag="IHHALP_00005"
+                     /protein_id="gnl|Bakta|IHHALP_00005"
                      /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                      AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                      MAD"
                      /codon_start=1
                      /transl_table=11
-                     /protein_id="gnl|Bakta|IHHALP_00005"
                      /inference="ab initio prediction:Prodigal:2.6"
      gene            complement(join(971..1330,1..141))
                      /locus_tag="IHHALP_00010"
      CDS             complement(join(971..1330,1..141))
                      /product="hypothetical protein"
                      /locus_tag="IHHALP_00010"
+                     /protein_id="gnl|Bakta|IHHALP_00010"
                      /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
                      EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
                      YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
                      IPI"
                      /codon_start=1
                      /transl_table=11
-                     /protein_id="gnl|Bakta|IHHALP_00010"
                      /inference="ab initio prediction:Prodigal:2.6"
 ORIGIN
         1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc