view test-data/TEST_5/TEST_5.log @ 4:3f0aa1b3e816 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
author iuc
date Mon, 24 Jul 2023 11:22:16 +0000
parents 865ece5ca178
children
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Bakta v1.8.1
Options and arguments:
	input: /tmp/tmp6wdeee6u/files/0/2/9/dataset_0293aae0-943d-4d1b-af6c-e5ed41b419da.dat
	db: /tmp/tmp6wdeee6u/job_working_directory/000/13/working/database_path, version 5.0, full
	output: /tmp/tmp6wdeee6u/job_working_directory/000/13/working/bakta_output
	tmp directory: /tmp/tmp6wdeee6u/tmp/tmpigp60rnb
	prefix: bakta_output
	threads: 1
	translation table: 4
	complete replicons: True
	skip tRNA: True
	skip tmRNA: True
	skip rRNA: True
	skip ncRNA: True
	skip ncRNA region: True
	skip CRISPR: True
	skip CDS: True
	skip sORF: True
	skip gap: True
	skip oriC/V/T: True
	skip plot: True

parse genome sequences...
	imported: 1
	filtered & revised: 1
	plasmids: 1

start annotation...
skip tRNA prediction...
skip tmRNA prediction...
skip rRNA prediction...
skip ncRNA prediction...
skip ncRNA region prediction...
skip CRISPR array prediction...
skip CDS prediction...
skip sORF prediction...
skip gap annotation...
skip oriC/T annotation...
apply feature overlap filters...
select features and create locus tags...
selected: 0
improve annotations...
	revised gene symbols: 0

genome statistics:
	Genome size: 1,330 bp
	Contigs/replicons: 1
	GC: 45.2 %
	N50: 1,330
	N ratio: 0.0 %
	coding density: 0.0 %

annotation summary:
	tRNAs: 0
	tmRNAs: 0
	rRNAs: 0
	ncRNAs: 0
	ncRNA regions: 0
	CRISPR arrays: 0
	CDSs: 0
		hypotheticals: 0
		pseudogenes: 0
		signal peptides: 0
	sORFs: 0
	gaps: 0
	oriCs/oriVs: 0
	oriTs: 0

export annotation results to: /tmp/tmp6wdeee6u/job_working_directory/000/13/working/bakta_output
	human readable TSV...
	GFF3...
	INSDC GenBank & EMBL...
	genome sequences...
	feature nucleotide sequences...
	translated CDS sequences...
	skip generation of circular genome plot...
	machine readable JSON...
	genome and annotation summary...

If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685
Annotation successfully finished in 0:00 [mm:ss].