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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
author | iuc |
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date | Mon, 24 Jul 2023 11:22:16 +0000 |
parents | 865ece5ca178 |
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Bakta v1.8.1 Options and arguments: input: /tmp/tmp6wdeee6u/files/0/2/9/dataset_0293aae0-943d-4d1b-af6c-e5ed41b419da.dat db: /tmp/tmp6wdeee6u/job_working_directory/000/13/working/database_path, version 5.0, full output: /tmp/tmp6wdeee6u/job_working_directory/000/13/working/bakta_output tmp directory: /tmp/tmp6wdeee6u/tmp/tmpigp60rnb prefix: bakta_output threads: 1 translation table: 4 complete replicons: True skip tRNA: True skip tmRNA: True skip rRNA: True skip ncRNA: True skip ncRNA region: True skip CRISPR: True skip CDS: True skip sORF: True skip gap: True skip oriC/V/T: True skip plot: True parse genome sequences... imported: 1 filtered & revised: 1 plasmids: 1 start annotation... skip tRNA prediction... skip tmRNA prediction... skip rRNA prediction... skip ncRNA prediction... skip ncRNA region prediction... skip CRISPR array prediction... skip CDS prediction... skip sORF prediction... skip gap annotation... skip oriC/T annotation... apply feature overlap filters... select features and create locus tags... selected: 0 improve annotations... revised gene symbols: 0 genome statistics: Genome size: 1,330 bp Contigs/replicons: 1 GC: 45.2 % N50: 1,330 N ratio: 0.0 % coding density: 0.0 % annotation summary: tRNAs: 0 tmRNAs: 0 rRNAs: 0 ncRNAs: 0 ncRNA regions: 0 CRISPR arrays: 0 CDSs: 0 hypotheticals: 0 pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 export annotation results to: /tmp/tmp6wdeee6u/job_working_directory/000/13/working/bakta_output human readable TSV... GFF3... INSDC GenBank & EMBL... genome sequences... feature nucleotide sequences... translated CDS sequences... skip generation of circular genome plot... machine readable JSON... genome and annotation summary... If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 Annotation successfully finished in 0:00 [mm:ss].