Mercurial > repos > iuc > bamtools_split_mapped

comparison bamtools_split_mapped.xml @ 2:6dbef7ea2253 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 862f05b5053f55def8007194a702019418697cb5
author iuc
date Fri, 13 Jan 2023 12:18:06 +0000
parents 2ed961caae0a
children fa7b5520ae53
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1:f2c21525a960 2:6dbef7ea2253
1 <tool id="bamtools_split_mapped" name="Split BAM by Mapped" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="bamtools_split_mapped" name="Split BAM by reads mapping status" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description></description> 2 <description>into a mapped and an unmapped dataset</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command> 7 <command>
32 32
33 BAMTools split is a utility for splitting BAM files. It is based on BAMtools suite of tools by Derek Barnett (https://github.com/pezmaster31/bamtools). 33 BAMTools split is a utility for splitting BAM files. It is based on BAMtools suite of tools by Derek Barnett (https://github.com/pezmaster31/bamtools).
34 34
35 ----- 35 -----
36 36
37 .. class:: warningmark
38
39
40 **How it works** 37 **How it works**
41 38
42 Splits the input BAM file into 2 output files named (MAPPED) and (UNMAPPED) containing mapped and unmapped reads, respectively. 39 Splits the input BAM file into 2 output files containing mapped and unmapped reads, respectively.
43 40
44 ----- 41 -----
45 42
46 .. class:: infomark 43 .. class:: infomark
47 44