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comparison bamtools_split_mapped.xml @ 3:fa7b5520ae53 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 5ebe920838ab3c36e93d620c479df17f43f8e336
author iuc
date Fri, 15 Mar 2024 13:49:55 +0000
parents 6dbef7ea2253
children 90af4f8f59af
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2:6dbef7ea2253 3:fa7b5520ae53
1 <tool id="bamtools_split_mapped" name="Split BAM by reads mapping status" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="bamtools_split_mapped" name="Split BAM by reads mapping status" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>into a mapped and an unmapped dataset</description> 2 <description>into a mapped and an unmapped dataset</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/>
6 <expand macro="requirements" /> 7 <expand macro="requirements" />
7 <command> 8 <command>
8 <![CDATA[ 9 <![CDATA[
9 ln -s '${input_bam}' 'localbam.bam' && 10 ln -s '${input_bam}' 'localbam.bam' &&
10 ln -s '${input_bam.metadata.bam_index}' 'localbam.bam.bai' && 11 ln -s '${input_bam.metadata.bam_index}' 'localbam.bam.bai' &&