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comparison bamtools_split_paired.xml @ 4:c5f04783750e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 7d29261847d2514a1ac4246e0b8bff1d32463434
author iuc
date Wed, 11 Feb 2026 14:31:51 +0000
parents 75d5afa09972
children
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3:75d5afa09972 4:c5f04783750e
1 <tool id="bamtools_split_paired" name="Split BAM into paired- and single-end" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="bamtools_split_paired" name="Split BAM into paired- and single-end" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>reads datasets</description> 2 <description>reads datasets</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/> 6 <expand macro="xrefs"/>
16 </command> 16 </command>
17 <inputs> 17 <inputs>
18 <param name="input_bam" type="data" format="bam" label="BAM dataset to split by single_end/paired_end"/> 18 <param name="input_bam" type="data" format="bam" label="BAM dataset to split by single_end/paired_end"/>
19 </inputs> 19 </inputs>
20 <outputs> 20 <outputs>
21 <data format="bam" name="single" label="${input_bam.name} SE reads" from_work_dir="split_bam.SINGLE_END.bam" /> 21 <data format="bam" name="single" label="${tool.name} on ${on_string}: SE reads" from_work_dir="split_bam.SINGLE_END.bam" />
22 <data format="bam" name="paired" label="${input_bam.name} PE reads" from_work_dir="split_bam.PAIRED_END.bam" /> 22 <data format="bam" name="paired" label="${tool.name} on ${on_string}: PE reads" from_work_dir="split_bam.PAIRED_END.bam" />
23 </outputs> 23 </outputs>
24 <tests> 24 <tests>
25 <test> 25 <test>
26 <param name="input_bam" ftype="bam" value="bamtools-input-paired.bam"/> 26 <param name="input_bam" ftype="bam" value="bamtools-input-paired.bam"/>
27 <output name="single" file="split_bam.SINGLE_END.bam" compare="sim_size" delta="200" /> 27 <output name="single" file="split_bam.SINGLE_END.bam" compare="sim_size" delta="200" />