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comparison bamtools_split_paired.xml @ 3:75d5afa09972 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 5ebe920838ab3c36e93d620c479df17f43f8e336
author iuc
date Fri, 15 Mar 2024 13:49:37 +0000
parents 5325e44297b9
children
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2:5325e44297b9 3:75d5afa09972
1 <tool id="bamtools_split_paired" name="Split BAM into paired- and single-end" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="bamtools_split_paired" name="Split BAM into paired- and single-end" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>reads datasets</description> 2 <description>reads datasets</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/>
6 <expand macro="requirements" /> 7 <expand macro="requirements" />
7 <command> 8 <command>
8 <![CDATA[ 9 <![CDATA[
9 ln -s '${input_bam}' 'localbam.bam' && 10 ln -s '${input_bam}' 'localbam.bam' &&
10 ln -s '${input_bam.metadata.bam_index}' 'localbam.bam.bai' && 11 ln -s '${input_bam.metadata.bam_index}' 'localbam.bam.bai' &&