Mercurial > repos > iuc > bamtools_split_ref

comparison bamtools_split_ref.xml @ 3:9b520009db81 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split commit 862f05b5053f55def8007194a702019418697cb5
author iuc
date Fri, 13 Jan 2023 12:17:49 +0000
parents 9dbf707bebb0
children 9b8feb118f9e
comparison
equal deleted inserted replaced
2:20ad2e231693 3:9b520009db81
1 <tool id="bamtools_split_ref" name="Split BAM by Reference" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.09"> 1 <tool id="bamtools_split_ref" name="Split BAM by reference" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.09">
2 <description>into dataset list collection</description> 2 <description>into a dataset list collection</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
7 <requirement type="package" version="1.16.1">samtools</requirement> 7 <requirement type="package" version="1.16.1">samtools</requirement>
91 91
92 Split alignments by reference name into a dataset list collection. The collection will be in the same order as the input BAM references and will consist of as many elements as there are references selected or listed in the input BAM header. 92 Split alignments by reference name into a dataset list collection. The collection will be in the same order as the input BAM references and will consist of as many elements as there are references selected or listed in the input BAM header.
93 93
94 .. class:: warningmark 94 .. class:: warningmark
95 95
96 In cases of unfinished genomes with very large number of reference sequences (scaffolds) 96 In cases of unfinished genomes with very large number of reference sequences (scaffolds) this could generate a collection with thousands (if not millions) of elements.
97 this could generate thousands (if not millions) of output datasets.
98 97
99 ----- 98 -----
100 99
101 .. class:: infomark 100 .. class:: infomark
102 101