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comparison macros.xml @ 0:067592b6b312 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit d5e71a9c6eeb449a00c335a244e5348c9bd49c16
author iuc
date Tue, 18 Sep 2018 05:41:44 -0400
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children ebe4463404b4
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-1:000000000000 0:067592b6b312
1 <macros>
2 <token name="@TOOL_VERSION@">0.8.1</token>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="@TOOL_VERSION@">bandage</requirement>
6 </requirements>
7 </xml>
8 <xml name="version_command">
9 <version_command>Bandage --version</version_command>
10 </xml>
11 <token name="@BANDAGE_OVERVIEW@">
12
13 **Bandage Overview**
14
15 Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.
16 De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.
17
18 Bandage works with Graphical Fragment Assembly (GFA) files. For more information about this file format, see here_
19
20 .. _here: https://gfa-spec.github.io/GFA-spec/GFA2.html
21 </token>
22 <xml name="citations">
23 <citations>
24 <citation type="doi">10.1093/bioinformatics/btv383</citation>
25 </citations>
26 </xml>
27 </macros>