Mercurial > repos > iuc > bandage
diff bandage_image.xml @ 4:94fe43e75ddc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit 585f5fa2d2714638c84b3c9ddaeb5a9557159a95"
author | iuc |
---|---|
date | Tue, 19 Jan 2021 10:06:26 +0000 |
parents | b2860df42e16 |
children | d8b1027d6ce0 |
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--- a/bandage_image.xml Thu Dec 05 17:17:29 2019 -0500 +++ b/bandage_image.xml Tue Jan 19 10:06:26 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="bandage_image" name="Bandage Image" version="@TOOL_VERSION@+galaxy2" profile="18.01"> +<tool id="bandage_image" name="Bandage Image" version="@TOOL_VERSION@+galaxy3" profile="18.01"> <description>visualize de novo assembly graphs</description> <macros> <import>macros.xml</import> @@ -17,6 +17,9 @@ #if $width: --width '$width' #end if + #if $fontsize: + --fontsize '$fontsize' + #end if $names $lengths ]]></command> @@ -26,6 +29,7 @@ <param argument="--width" type="integer" min="1" optional="True" label="Image width" help="If only height or width is set, the other will be determined automatically. If both are set, the image will be exactly that size. Default: not set."/> <param argument="--names" type="boolean" truevalue="--names" falsevalue="" label="Node name labels?"/> <param argument="--lengths" type="boolean" truevalue="--lengths" falsevalue="" label="Node length labels?"/> + <param argument="--fontsize" type="integer" min="5" optional="true" label="Font size" help="Node font size?"/> <param name="output_format" type="select" label="Produce jpg, png or svg file?"> <option selected="True" value="jpg">.jpg</option> <option value="png">.png</option> @@ -65,6 +69,14 @@ <param name="lengths" value="--lengths"/> <output name="outfile" ftype="svg" file="out_labels.svg" compare="sim_size" delta="250000"/> </test> + <test><!-- test with node name, length labels and fontsize--> + <param name="input_file" ftype="txt" value="bandage_input.txt"/> + <param name="output_format" value="jpg"/> + <param name="names" value="--names"/> + <param name="lengths" value="--lengths"/> + <param name="fontsize" value="5"/> + <output name="outfile" ftype="jpg" file="out_fontsize.jpg" compare="sim_size" delta="250000"/> + </test> </tests> <help><![CDATA[ @BANDAGE_OVERVIEW@