Mercurial > repos > iuc > baredsc_2d

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit 55a4f3540558731fb47bf130c6a8984fa6f6ec9a
author iuc
date Tue, 26 Mar 2024 15:12:16 +0000
parents aa4a6f0916b4
children
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c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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1 <tool id="baredsc_2d" name="baredSC 2d" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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2 <description>Compute distribution for a pair of genes</description>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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3 <macros>
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4 <import>macros.xml</import>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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5 </macros>
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6 <expand macro="edam_topics"/>
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7 <edam_operations>
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8 <edam_operation>operation_2495</edam_operation>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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9 <edam_operation>operation_3463</edam_operation>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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10 </edam_operations>
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11 <xrefs>
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12 <xref type="bio.tools">baredsc</xref>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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13 </xrefs>
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14 <expand macro="requirements"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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15 <command detect_errors="exit_code"><![CDATA[
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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16 baredSC_2d
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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17 ## Required inputs:
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18 @REQUIRED_INPUTS_2D@
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19
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20 ## Filter cells
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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21 @FILTER_CELLS@
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22 ## MCMC
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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23 @MCMC_2D@
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24 @BAREDSC_COMMON@
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25 ## Plots
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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26 @PLOTS@
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27 @PRETTYBINS_SPLITY_COLORSCALE_2D@
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28 ## Advanced
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29 @ADVANCED_COMMON_X@
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30 @ADVANCED_COMMON_COMPLEMENT_2D@
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31 @ADVANCED_BAREDSC_COMMON@
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32 ## Outputs
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33 --output output
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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34 --figure baredSC.$plots.image_file_format
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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35 --logevidence logevidence.txt &&
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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36 mkdir QC &&
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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37 mv baredSC_convergence.* QC &&
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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38 mv baredSC_p.$plots.image_file_format QC &&
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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39 mv baredSC_corner.* QC &&
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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40 mkdir output &&
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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41 mv baredSC_neff.txt output &&
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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42 @ORDER_OUTPUTS_2D@
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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43 ]]></command>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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44 <inputs>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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45 <expand macro="macro_input_counts"/>
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46 <expand macro="macro_two_genes"/>
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47 <expand macro="macro_filter_cells"/>
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48 <section name="MCMC" title="MCMC parameters">
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49 <expand macro="macro_MCMC_params_common_axis" axis="x" />
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50 <expand macro="macro_MCMC_params_common_axis" axis="y" />
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51 <expand macro="macro_scale_seed"/>
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52 <expand macro="macro_MCMC_common_baredSC"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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53 </section>
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54 <section name="plots" title="Customize plots">
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55 <expand macro="macro_plots"/>
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56 <expand macro="macro_prettybins_axis" axis="x"/>
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57 <expand macro="macro_prettybins_axis" axis="y"/>
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58 <expand macro="macro_colorscale"/>
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59 <expand macro="macro_splity"/>
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60 </section>
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61 <section name="advanced" title="Advanced parameters" expanded="false">
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62 <expand macro="macro_advanced_common_axis" axis="x" default_osamppdf="4"/>
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63 <expand macro="macro_advanced_common_axis" axis="y" default_osamppdf="4"/>
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64 <expand macro="macro_advanced_evidence"/>
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65 <expand macro="macro_advanced_common_baredSC"/>
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66 <expand macro="macro_scaleprior"/>
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67 </section>
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68 </inputs>
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69 <outputs>
1
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70 <data format="npz" name="output" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: Numpy archive" from_work_dir="output.npz"/>
aa4a6f0916b4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit 576069ce2296ef58daa8a4e03c993d5900608c4c
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71 <data format="txt" name="neff" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: Neff" from_work_dir="output/baredSC_neff.txt"/>
aa4a6f0916b4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit 576069ce2296ef58daa8a4e03c993d5900608c4c
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72 <collection type="list" name="qc_plots" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: QC plots">
0
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73 <discover_datasets pattern="baredSC_(?P&lt;identifier_0&gt;\S+)\.(?P&lt;ext&gt;.*)" directory="QC"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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74 </collection>
1
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75 <data format="tabular" name="pdf2d" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: mean PDF in matrix format" from_work_dir="output/baredSC_pdf2d.txt"/>
aa4a6f0916b4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit 576069ce2296ef58daa8a4e03c993d5900608c4c
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76 <data format="tabular" name="pdf2d_flat" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: PDF with error bar, one bin per line" from_work_dir="output/baredSC_pdf2d_flat.txt">
0
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77 <actions>
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78 <action name="column_names" type="metadata" default="x,y,low,mean,high,median" />
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79 </actions>
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80 </data>
1
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81 <data format="png" name="plot" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: plot" from_work_dir="baredSC">
0
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82 <change_format>
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83 <when input="plots.image_file_format" value="png" format="png" />
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84 <when input="plots.image_file_format" value="svg" format="svg" />
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85 <when input="plots.image_file_format" value="pdf" format="pdf" />
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86 </change_format>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
87 </data>
1
aa4a6f0916b4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit 576069ce2296ef58daa8a4e03c993d5900608c4c
iuc
parents: 0
diff changeset
88 <collection type="list" name="other_outputs" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: plots and txt">
0
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
89 <discover_datasets pattern="baredSC_(?P&lt;identifier_0&gt;\S+)\.(?P&lt;ext&gt;.*)"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
90 </collection>
1
aa4a6f0916b4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit 576069ce2296ef58daa8a4e03c993d5900608c4c
iuc
parents: 0
diff changeset
91 <data format="txt" name="logevidence" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: Log evidence" from_work_dir="logevidence.txt"/>
0
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
92 </outputs>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
93 <tests>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
94 <!-- First test I decreased the number of samples and bins to make it quicker-->
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
95 <test>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
96 <conditional name="input_counts">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
97 <param name="filetype" value="tabular"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
98 <param name="input" value="nih3t3_generated_2d_2.txt"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
99 </conditional>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
100 <param name="geneXColName" value="0.5_0_0_0.5_x"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
101 <param name="geneYColName" value="0.5_0_0_0.5_y"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
102 <section name="MCMC">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
103 <param name="nnorm" value="2"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
104 <param name="nx" value="10"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
105 <param name="ny" value="12"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
106 <conditional name="automaticRestart">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
107 <param name="set_minNeff" value="no"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
108 </conditional>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
109 <param name="nsampMCMC" value="20000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
110 </section>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
111 <section name="plots">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
112 <param name="prettyBinsx" value="50"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
113 <param name="prettyBinsy" value="50"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
114 </section>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
115 <output name="output">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
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116 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
117 <has_size value="524174" delta="50000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
118 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
119 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
120 <output name="neff">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
121 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
122 <has_text_matching expression="^1[0-2][0-9]\."/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
123 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
124 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
125 <output_collection name="qc_plots" count="3" type="list">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
126 <element name="convergence" ftype="png">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
127 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
128 <has_size value="35116" delta="3000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
129 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
130 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
131 <element name="p" ftype="png">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
132 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
133 <has_size value="279538" delta="20000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
134 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
135 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
136 <element name="corner" ftype="png">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
137 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
138 <has_size value="1450978" delta="100000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
139 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
140 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
141 </output_collection>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
142 <output name="pdf2d" ftype="tabular">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
143 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
144 <has_n_lines n="51"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
145 <has_line_matching expression="xy\t0\.025\t0\.07500000000000001\t0\.125\t0\.17500000000000002\t0\.225\t0\.275\t0\.32500000000000007\t0\.375\t0\.42500000000000004\t0\.475\t0\.525\t0\.5750000000000001\t0\.625\t0\.675\t0\.7250000000000001\t0\.775\t0\.8250000000000001\t0\.875\t0\.925\t0\.9750000000000001\t1\.025\t1\.0750000000000002\t1\.125\t1\.1750000000000003\t1\.225\t1\.275\t1\.3250000000000002\t1\.375\t1\.4250000000000003\t1\.475\t1\.525\t1\.5750000000000002\t1\.625\t1\.6750000000000003\t1\.725\t1\.775\t1\.8250000000000002\t1\.875\t1\.9250000000000003\t1\.975\t2\.0250000000000004\t2\.075\t2\.125\t2\.175\t2\.225\t2\.2750000000000004\t2\.325\t2\.375\t2\.4250000000000003\t2\.475"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
146 <has_text_matching expression="2\.5[0-9]+e-02\s+3\.[0-9]+e-02\s+[56]\.[0-9]+e-02"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
147 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
148 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
149 <output name="pdf2d_flat" ftype="tabular">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
150 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
151 <has_text_matching expression="x\s+y\s+low\s+mean\s+high\s+median"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
152 <has_n_lines n="2501"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
153 <has_line_matching expression="0\.025\s+0\.025[0-9]+\s+0\.002[0-9]+\s+0\.03[0-9]+\s+0\.0[67][0-9]+\s+0\.0[12][0-9]+"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
154 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
155 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
156 <output name="plot" ftype="png">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
157 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
158 <has_size value="40843" delta="4000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
159 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
160 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
161 <output_collection name="other_outputs" count="4" type="list">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
162 <element name="p" ftype="txt">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
163 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
164 <has_line_matching expression="name\s+low\s+median\s+high"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
165 <has_line_matching expression="xy_mux[01]\s+0\.3[0-9]+\s+0\.3[0-9]+\s+0\.3[0-9]+"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
166 <has_text_matching expression="xy_mux[01]\s+0\.9[0-9]+\s+1\.0[0-9]+\s+1\.0[0-9]+" />
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
167 <has_n_lines n="12"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
168 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
169 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
170 <element name="corr" ftype="txt">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
171 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
172 <has_n_lines n="2"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
173 <has_line_matching expression="mean\tmedian\tlow\thigh\tpval\terror"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
174 <has_text_matching expression="0\.9[0-9]+\s+0\.9[0-9]+\s+0\.8[0-9]+\s+0\.9[0-9]+\s+0\.00[7-9][0-9]+\s+0\.00[7-9][0-9]+\s+"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
175 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
176 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
177 <element name="individuals" ftype="png">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
178 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
179 <has_size value="56538" delta="5000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
180 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
181 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
182 <element name="median" ftype="png">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
183 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
184 <has_size value="40829" delta="4000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
185 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
186 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
187 </output_collection>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
188 <output name="logevidence">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
189 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
190 <has_text_matching expression="^-81[0-9][0-9]\."/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
191 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
192 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
193 </test>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
194 <!-- Second test pdf filtering cells title log scale-->
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
195 <test>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
196 <conditional name="input_counts">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
197 <param name="filetype" value="tabular"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
198 <param name="input" value="nih3t3_generated_2d_2.txt"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
199 </conditional>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
200 <param name="geneXColName" value="0.5_0_0_0.5_x"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
201 <param name="geneYColName" value="0.5_0_0_0.5_y"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
202 <conditional name="filter">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
203 <param name="nb" value="1"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
204 <param name="metadata1ColName" value="0_0.5_0.5_0_group"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
205 <param name="metadata1Values" value="1.0"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
206 </conditional>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
207 <section name="MCMC">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
208 <param name="xmin" value="-12"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
209 <param name="xmax" value="-7"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
210 <param name="nx" value="25"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
211 <param name="ymin" value="-12"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
212 <param name="ymax" value="-7"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
213 <param name="ny" value="25"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
214 <param name="nnorm" value="2"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
215 <param name="nsampMCMC" value="10000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
216 <conditional name="automaticRestart">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
217 <param name="set_minNeff" value="yes"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
218 <param name="minNeff" value="200"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
219 </conditional>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
220 <conditional name="scale">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
221 <param name="type" value="log"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
222 </conditional>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
223 </section>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
224 <section name="plots">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
225 <param name="title" value="TEST2"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
226 <param name="image_file_format" value="pdf"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
227 <param name="splity" value="-10.5 -9.5"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
228 </section>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
229 <output name="output">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
230 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
231 <has_size value="2690419" delta="200000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
232 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
233 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
234 <output name="neff">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
235 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
236 <has_text_matching expression="^(10|9)[0-9][0-9]\."/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
237 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
238 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
239 <output_collection name="qc_plots" count="3" type="list">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
240 <element name="convergence" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
241 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
242 <has_size value="28184" delta="2000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
243 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
244 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
245 <element name="p" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
246 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
247 <has_size value="800065" delta="80000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
248 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
249 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
250 <element name="corner" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
251 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
252 <has_size value="1431497" delta="200000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
253 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
254 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
255 </output_collection>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
256 <output name="pdf2d" ftype="tabular">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
257 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
258 <has_n_lines n="26"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
259 <has_line_matching expression="xy\s+-11\.9\s+-11\.7\s+-11\.5\s+-11\.3\s+-11\.1\s+-10\.9\s+-10\.7\s+-10\.5\s+-10\.3\s+-10\.1\s+-9\.9\s+-9\.7\s+-9\.5\s+-9\.3\s+-9\.1\s+-8\.9\s+-8\.7\s+-8\.5\s+-8\.3\s+-8\.1\s+-7\.9\s+-7\.699999999999999\s+-7\.5\s+-7\.299999999999999\s+-7\.1"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
260 <has_text_matching expression="-1\.19[0-9]+e\+01\s+"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
261 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
262 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
263 <output name="pdf2d_flat" ftype="tabular">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
264 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
265 <has_text_matching expression="x\s+y\s+low\s+mean\s+high\s+median"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
266 <has_n_lines n="626"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
267 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
268 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
269 <output name="plot" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
270 <assert_contents>
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parents:
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271 <has_size value="15541" delta="1000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
272 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
273 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
274 <output_collection name="other_outputs" count="10" type="list">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
275 <element name="p" ftype="txt">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
276 <assert_contents>
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iuc
parents:
diff changeset
277 <has_line_matching expression="name\s+low\s+median\s+high"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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278 <has_line_matching expression="xy_mux[01]\s+-8\.6[0-9]+\s+-8\.6[0-9]+\s+-8\.5[0-9]+"/>
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iuc
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diff changeset
279 <has_text_matching expression="xy_mux[01]\s+-10\.2[0-9]+\s+-10\.1[0-9]+\s+-10\.0[0-9]+" />
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
280 <has_n_lines n="12"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
281 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
282 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
283 <element name="corr" ftype="txt">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
284 <assert_contents>
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iuc
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diff changeset
285 <has_n_lines n="2"/>
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iuc
parents:
diff changeset
286 <has_line_matching expression="mean\tmedian\tlow\thigh\tpval\terror"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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diff changeset
287 <has_text_matching expression="0\.9[0-9]+\s+0\.9[0-9]+\s+0\.8[0-9]+\s+0\.9[0-9]+\s+0\.00[10|9][0-9]+\s+0\.00[10|9][0-9]+\s+"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
288 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
289 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
290 <element name="individuals" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
291 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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292 <has_size value="38594" delta="3000"/>
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iuc
parents:
diff changeset
293 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
294 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
295 <element name="median" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
296 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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diff changeset
297 <has_size value="15482" delta="1000"/>
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iuc
parents:
diff changeset
298 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
299 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
300 <element name="split-10.5" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
301 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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302 <has_size value="11801" delta="1000"/>
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iuc
parents:
diff changeset
303 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
304 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
305 <element name="split-10.5_renorm" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
306 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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307 <has_size value="13138" delta="1000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
308 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
309 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
310 <element name="split-10.5_pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
311 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
312 <has_text_matching expression="x\s+low1\s+mean1\s+high1\s+low2\s+mean2\s+high2"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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313 <has_n_lines n="26"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
314 <has_text_matching expression="-1\.19[0-9]+e\+01"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
315 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
316 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
317 <element name="split-9.5" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
318 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
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319 <has_size value="11919" delta="1000"/>
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iuc
parents:
diff changeset
320 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
321 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
322 <element name="split-9.5_renorm" ftype="pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
323 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
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diff changeset
324 <has_size value="13145" delta="1000"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
325 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
326 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
327 <element name="split-9.5_pdf">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
328 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
329 <has_text_matching expression="x\s+low1\s+mean1\s+high1\s+low2\s+mean2\s+high2"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
330 <has_n_lines n="26"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
331 <has_text_matching expression="-1\.19[0-9]+e\+01\s+"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
332 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
333 </element>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
334 </output_collection>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
335 <output name="logevidence">
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
336 <assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
337 <has_text_matching expression="^-40[0-9][0-9]\."/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
338 </assert_contents>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
339 </output>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
340 </test>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
341 </tests>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
342 <expand macro="helpcitations"/>
c29e7bb492bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit dad42d788f7407976a67ed50cc886ebe79740e32
iuc
parents:
diff changeset
343 </tool>