Mercurial > repos > iuc > baredsc_combine_2d

diff baredsc_combine_2d.xml @ 1:ae969fdb8442 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit 576069ce2296ef58daa8a4e03c993d5900608c4c
author iuc
date Mon, 16 Oct 2023 14:01:47 +0000
parents 239193b96d72
children 1d77986f9ddc
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--- a/baredsc_combine_2d.xml	Mon Oct 02 13:25:42 2023 +0000
+++ b/baredsc_combine_2d.xml	Mon Oct 16 14:01:47 2023 +0000
@@ -64,20 +64,20 @@
         </section>
     </inputs>
     <outputs>
-        <data format="tabular" name="pdf2d" label="${tool.name} on $getVar('input_counts.input', 'input_counts.inputAnnData') for ${geneXColName} and ${geneYColName}: mean PDF in matrix format" from_work_dir="output/baredSC_pdf2d.txt"/>
-        <data format="tabular" name="pdf2d_flat" label="${tool.name} on $getVar('input_counts.input', 'input_counts.inputAnnData') for ${geneXColName} and ${geneYColName}: PDF with error bar, one bin per line" from_work_dir="output/baredSC_pdf2d_flat.txt">
+        <data format="tabular" name="pdf2d" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: mean PDF in matrix format" from_work_dir="output/baredSC_pdf2d.txt"/>
+        <data format="tabular" name="pdf2d_flat" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: PDF with error bar, one bin per line" from_work_dir="output/baredSC_pdf2d_flat.txt">
             <actions>
                 <action name="column_names" type="metadata" default="x,y,low,mean,high,median" />
             </actions>
         </data>
-        <data format="png" name="plot" label="${tool.name} on $getVar('input_counts.input', 'input_counts.inputAnnData') for ${geneXColName} and ${geneYColName}: plot" from_work_dir="baredSC">
+        <data format="png" name="plot" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: plot" from_work_dir="baredSC">
             <change_format>
                 <when input="plots.image_file_format" value="png" format="png" />
                 <when input="plots.image_file_format" value="svg" format="svg" />
                 <when input="plots.image_file_format" value="pdf" format="pdf" />
             </change_format>
         </data>
-        <collection type="list" name="other_outputs" label="${tool.name} on $getVar('input_counts.input', 'input_counts.inputAnnData') for ${geneXColName} and ${geneYColName}: plots and txt">
+        <collection type="list" name="other_outputs" label="${tool.name} on $getVar('input_counts.input', $getVar('input_counts.inputAnnData', 'shouldNeverHappen')).element_identifier for ${geneXColName} and ${geneYColName}: plots and txt">
             <discover_datasets pattern="baredSC_(?P&lt;identifier_0&gt;\S+)\.(?P&lt;ext&gt;.*)"/>
         </collection>
     </outputs>