# HG changeset patch
# User iuc
# Date 1570877543 14400
# Node ID 4445939cacc9be8ae8a1ab7924079bdcce3a2bc9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pax2bam commit 07edb81ab753f8ea6001875e84a68f820febfc88"
diff -r 000000000000 -r 4445939cacc9 bax2bam.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/bax2bam.xml Sat Oct 12 06:52:23 2019 -0400
@@ -0,0 +1,128 @@
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+ converts PacBio basecall format (bax.h5) into BAM
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+ macros.xml
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+ readtype == '--subread'
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+ readtype == '--subread'
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+ readtype == '--hqregion'
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+ readtype == '--hqregion'
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+ readtype == '--polymeraseread'
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+ `_ and `PacBio Bioconda `_.
+ ]]>
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+@misc{PacificBiosciences2018,
+ author = {Pacific Biosciences},
+ year = {2018},
+ title = {bax2bam},
+ publisher = {GitHub},
+ journal = {GitHub repository},
+ url = {https://github.com/pacificbiosciences/bax2bam/},
+}
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diff -r 000000000000 -r 4445939cacc9 macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Sat Oct 12 06:52:23 2019 -0400
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+ 0.0.9
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+ galaxy0
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+ bax2bam
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\ No newline at end of file
diff -r 000000000000 -r 4445939cacc9 test-data/hqregions.bam
Binary file test-data/hqregions.bam has changed
diff -r 000000000000 -r 4445939cacc9 test-data/lqregions.bam
Binary file test-data/lqregions.bam has changed
diff -r 000000000000 -r 4445939cacc9 test-data/polymerase.bam
Binary file test-data/polymerase.bam has changed
diff -r 000000000000 -r 4445939cacc9 test-data/scraps.bam
Binary file test-data/scraps.bam has changed
diff -r 000000000000 -r 4445939cacc9 test-data/scraps_custom.bam
Binary file test-data/scraps_custom.bam has changed
diff -r 000000000000 -r 4445939cacc9 test-data/set.1.bax.h5
Binary file test-data/set.1.bax.h5 has changed
diff -r 000000000000 -r 4445939cacc9 test-data/set.2.bax.h5
Binary file test-data/set.2.bax.h5 has changed
diff -r 000000000000 -r 4445939cacc9 test-data/set.3.bax.h5
Binary file test-data/set.3.bax.h5 has changed
diff -r 000000000000 -r 4445939cacc9 test-data/subreads.bam
Binary file test-data/subreads.bam has changed
diff -r 000000000000 -r 4445939cacc9 test-data/subreads_custom.bam
Binary file test-data/subreads_custom.bam has changed