# HG changeset patch
# User iuc
# Date 1618656060 0
# Node ID 5bd67e012d547e1d527f925091395645c924d93b
# Parent ee356d7a5518f80a75136ed96bcbbd5d63c0e8a8
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pax2bam commit 958bbd9e30ae4d320f872f1ab5e1bacfb28b1a00"
diff -r ee356d7a5518 -r 5bd67e012d54 bax2bam.xml
--- a/bax2bam.xml Thu Nov 28 15:49:50 2019 -0500
+++ b/bax2bam.xml Sat Apr 17 10:41:00 2021 +0000
@@ -1,94 +1,133 @@
-
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converts PacBio basecall format (bax.h5) into BAM
- macros.xml
+ 0.0.11
+ 0
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+ topic_3168
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+ operation_3434
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+ bax2bam
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readtype == '--subread'
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readtype == '--subread'
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readtype == '--hqregion'
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readtype == '--hqregion'
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readtype == '--polymeraseread'
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`_ and `PacBio Bioconda `_.
+ More information can be found on the GitHub repositories `bax2bam `_ and `PacBio Bioconda `_.
]]>
@@ -125,4 +164,4 @@
}
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\ No newline at end of file
diff -r ee356d7a5518 -r 5bd67e012d54 macros.xml
--- a/macros.xml Thu Nov 28 15:49:50 2019 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,12 +0,0 @@
-
- 0.0.9
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- galaxy0
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- bax2bam
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\ No newline at end of file
diff -r ee356d7a5518 -r 5bd67e012d54 test-data/hqregions.bam
Binary file test-data/hqregions.bam has changed
diff -r ee356d7a5518 -r 5bd67e012d54 test-data/lqregions.bam
Binary file test-data/lqregions.bam has changed
diff -r ee356d7a5518 -r 5bd67e012d54 test-data/polymerase.bam
Binary file test-data/polymerase.bam has changed
diff -r ee356d7a5518 -r 5bd67e012d54 test-data/scraps.bam
Binary file test-data/scraps.bam has changed
diff -r ee356d7a5518 -r 5bd67e012d54 test-data/scraps_custom.bam
Binary file test-data/scraps_custom.bam has changed
diff -r ee356d7a5518 -r 5bd67e012d54 test-data/subreads.bam
Binary file test-data/subreads.bam has changed
diff -r ee356d7a5518 -r 5bd67e012d54 test-data/subreads_custom.bam
Binary file test-data/subreads_custom.bam has changed