Mercurial > repos > iuc > bbgbigwig

changeset 1:b95435276746 draft default tip

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planemo upload for repository https://www.encodeproject.org/software/bedgraphtobigwig/ commit 24d62a0136f2c9adac56a247b498b373bb8d9e07
author iuc
date Sat, 15 Jun 2024 10:51:54 +0000
parents 498748c87252
children
files bam_bed_gff_to_bigwig.xml tool-data/dbkeys.loc.sample tool_data_table_conf.xml.sample
diffstat 3 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/bam_bed_gff_to_bigwig.xml	Fri Jun 14 21:23:54 2024 +0000
+++ b/bam_bed_gff_to_bigwig.xml	Sat Jun 15 10:51:54 2024 +0000
@@ -96,7 +96,7 @@
 
    Estimates coverage of a reference genome for bam, bed or gff as a bigwig, suitable for viewing in JBrowse2 or other browser.
  
-   A chromosome lengths file must be provided if the input has a missing dbkey='?' on the pencil (edit attributes) tab. 
+   A chromosome lengths file must be provided if the input has a missing dbkey (='?') on the pencil (edit attributes) form. 
    
    The actual reference is not needed. The Compute sequence length tool can generate the lengths file.
  
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/dbkeys.loc.sample	Sat Jun 15 10:51:54 2024 +0000
@@ -0,0 +1,2 @@
+#<dbkey>	<display_name>	<len_file_path>
+hg38	hg38	testing.len
--- a/tool_data_table_conf.xml.sample	Fri Jun 14 21:23:54 2024 +0000
+++ b/tool_data_table_conf.xml.sample	Sat Jun 15 10:51:54 2024 +0000
@@ -4,4 +4,5 @@
         <columns>value, name, len_path</columns>
         <file path="tool-data/dbkeys.loc" />
     </table>
-</tables>
\ No newline at end of file
+</tables>
+