Mercurial > repos > iuc > bbtools_bbmap

diff bbmap.xml @ 7:9ed6579f52f3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f
author iuc
date Mon, 06 Feb 2023 18:06:17 +0000
parents 858a65b52cf9
children 7f19559b8b55
line wrap: on
line diff
--- a/bbmap.xml	Tue Jul 05 13:06:30 2022 +0000
+++ b/bbmap.xml	Mon Feb 06 18:06:17 2023 +0000
@@ -1,8 +1,9 @@
-<tool id="bbtools_bbmap" name="BBTools: BBMap" version="@WRAPPER_VERSION@+galaxy4" profile="@PROFILE@">
+<tool id="bbtools_bbmap" name="BBTools: BBMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>short-read aligner</description>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="edam_ontology"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 #import os
@@ -269,13 +270,13 @@
             <output name="output_all_reads" ftype="bam">
                 <metadata name="dbkey" value="89"/>
                 <assert_contents>
-                    <has_size value="9639" delta="300"/>
+                    <has_size value="9310" delta="300"/>
                 </assert_contents>
             </output>
             <output name="output_unmapped_reads" ftype="bam">
                 <metadata name="dbkey" value="89"/>
                 <assert_contents>
-                    <has_size value="9639" delta="300"/>
+                    <has_size value="9310" delta="300"/>
                 </assert_contents>
             </output>
             <output name="output_mapped_reads" ftype="bam">
@@ -294,13 +295,13 @@
             <output name="output_all_reads" ftype="qname_sorted.bam">
                 <metadata name="dbkey" value="89"/>
                 <assert_contents>
-                    <has_size value="17540" delta="600"/>
+                    <has_size value="16893" delta="600"/>
                 </assert_contents>
             </output>
             <output name="output_unmapped_reads" ftype="qname_sorted.bam">
                 <metadata name="dbkey" value="89"/>
                 <assert_contents>
-                    <has_size value="17540" delta="600"/>
+                    <has_size value="16893" delta="600"/>
                 </assert_contents>
             </output>
             <output name="output_mapped_reads" ftype="qname_sorted.bam">
@@ -325,13 +326,13 @@
             <output name="output_all_reads" ftype="qname_input_sorted.bam">
                 <metadata name="dbkey" value="89"/>
                 <assert_contents>
-                    <has_size value="17602" delta="600"/>
+                    <has_size value="16928" delta="600"/>
                 </assert_contents>
             </output>
             <output name="output_unmapped_reads" ftype="qname_input_sorted.bam">
                 <metadata name="dbkey" value="89"/>
                 <assert_contents>
-                    <has_size value="17602" delta="600"/>
+                    <has_size value="16928" delta="600"/>
                 </assert_contents>
             </output>
             <output name="output_mapped_reads" ftype="qname_input_sorted.bam">