Mercurial > repos > iuc > bbtools_bbmap
diff bbmap.xml @ 2:e0ca2ec4f5d9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
| author | iuc |
|---|---|
| date | Thu, 11 Nov 2021 16:38:09 +0000 |
| parents | 07a6e49c7d74 |
| children | 8157a81f511c |
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--- a/bbmap.xml Tue Oct 05 20:06:15 2021 +0000 +++ b/bbmap.xml Thu Nov 11 16:38:09 2021 +0000 @@ -61,23 +61,7 @@ #end if ]]></command> <inputs> - <conditional name="input_type_cond"> - <param name="input_type" type="select" label="Choose the category of the files to be analyzed"> - <option value="single" selected="true">Single dataset</option> - <option value="pair">Dataset pair</option> - <option value="paired">List of dataset pairs</option> - </param> - <when value="single"> - <param name="read1" type="data" format="fastqsanger.gz,fastqsanger" label="Read1 fastq file"/> - </when> - <when value="pair"> - <param name="read1" type="data" format="fastqsanger.gz,fastqsanger" label="Read1 fastq file"/> - <param name="read2" type="data" format="fastqsanger.gz,fastqsanger" label="Read2 fastq file"/> - </when> - <when value="paired"> - <param name="reads_collection" type="data_collection" format="fastqsanger,fastqsanger.gz" collection_type="paired" label="Collection of fastqsanger paired read files"/> - </when> - </conditional> + <expand macro="input_type_cond"/> <expand macro="reference_source_cond"/> <param name="output_sort" type="select" label="BAM sorting mode" help="The 'Not sorted' option can significantly extend the run time of the tool (it runs using a single thread)."> <option value="coordinate" selected="True">Sort by chromosomal coordinates</option>