# HG changeset patch
# User iuc
# Date 1643756468 0
# Node ID 8157a81f511c4881e9eeb7a6b03e3b6c8d8e7051
# Parent  e0ca2ec4f5d9686577e684f3639abbf8dc75805d
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 425671870866660485ef6a35c94d3736f5c1df97"

diff -r e0ca2ec4f5d9 -r 8157a81f511c bbmap.xml
--- a/bbmap.xml	Thu Nov 11 16:38:09 2021 +0000
+++ b/bbmap.xml	Tue Feb 01 23:01:08 2022 +0000
@@ -16,18 +16,16 @@
 
 #if str($input_type_cond.input_type) in ['single', 'pair']:
     #set read1 = $input_type_cond.read1
-    #set read1_identifier = re.sub('[^\s\w\-]', '_', str($read1.element_identifier))
     ## bbmap uses the file extension to determine the input format.
-    #set ext = $read1_identifier + '.fastq'
+    #set ext = '.fastq'
     #if $read1.ext.endswith('.gz'):
         #set ext = $ext + '.gz'
     #end if
-    #set read1_file = $read1_identifier + $ext
+    #set read1_file = 'forward' + $ext
     ln -s '${read1}' '${read1_file}' &&
     #if str($input_type_cond.input_type) == 'pair':
         #set read2 = $input_type_cond.read2
-        #set read2_identifier = re.sub('[^\s\w\-]', '_', str($read2.element_identifier))
-        #set read2_file = $read2_identifier + $ext
+        #set read2_file = 'reverse' + $ext
         ln -s '${read2}' '${read2_file}' &&
     #end if
 #else:
diff -r e0ca2ec4f5d9 -r 8157a81f511c macros.xml
--- a/macros.xml	Thu Nov 11 16:38:09 2021 +0000
+++ b/macros.xml	Tue Feb 01 23:01:08 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@WRAPPER_VERSION@">1.0.0</token>
-    <token name="@VERSION_SUFFIX@">1.0.0</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <token name="@PROFILE@">20.09</token>
     <xml name="requirements">
         <requirements>
@@ -39,11 +39,11 @@
                 <option value="paired">List of dataset pairs</option>
             </param>
             <when value="single">
-                <param name="read1" type="data" format="fastqsanger.gz,fastqsanger" label="Read1 fastq file"/>
+                <param name="read1" type="data" format="fastqsanger.gz,fastqsanger" label="Fastq file"/>
             </when>
             <when value="pair">
-                <param name="read1" type="data" format="fastqsanger.gz,fastqsanger" label="Read1 fastq file"/>
-                <param name="read2" type="data" format="fastqsanger.gz,fastqsanger" label="Read2 fastq file"/>
+                <param name="read1" type="data" format="fastqsanger.gz,fastqsanger" label="Forward reads fastq file"/>
+                <param name="read2" type="data" format="fastqsanger.gz,fastqsanger" label="Reverse reads fastq file"/>
             </when>
             <when value="paired">
                 <param name="reads_collection" type="data_collection" format="fastqsanger,fastqsanger.gz" collection_type="paired" label="Collection of fastqsanger paired read files"/>