Mercurial > repos > iuc > bbtools_bbmerge

comparison bbmerge.xml @ 5:1af48f9cc27b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit e6a741fc2fe38e91a310e9c29467c814a2d34cac
author iuc
date Sat, 18 May 2024 19:12:59 +0000
parents 5d8b93c0731f
children cab19c0452c4
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4:5d8b93c0731f 5:1af48f9cc27b
2 <description>Merge overlapping mates of a read pair</description> 2 <description>Merge overlapping mates of a read pair</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="edam_ontology"/> 6 <expand macro="edam_ontology"/>
7 <expand macro="bio.tools"/>
7 <expand macro="requirements"/> 8 <expand macro="requirements"/>
8 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
9 #if str($input_type_cond.input_type) in ['single', 'pair']: 10 #if str($input_type_cond.input_type) in ['single', 'pair']:
10 #set read1 = $input_type_cond.read1 11 #set read1 = $input_type_cond.read1
11 ## bbmerge uses the file extension to determine the input format. 12 ## bbmerge uses the file extension to determine the input format.