Mercurial > repos > iuc > bbtools_callvariants

comparison test-data/cv_output.gff @ 10:7e041c120b96 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
author iuc
date Tue, 27 Aug 2024 10:14:45 +0000
parents 18b91d72794b
children
comparison
equal deleted inserted replaced
9:66b138a2e74c 10:7e041c120b96
1 ##gff-version 1 ##gff-version 3
2 #BBMapVersion 2 #BBMapVersion 39.08
3 #ploidy 2 3 #ploidy 2
4 #rarity 1.00000 4 #rarity 1.00000
5 #minAlleleFraction 0.1000 5 #minAlleleFraction 0.1000
6 #reads 2207 6 #reads 2207
7 #pairedReads 0 7 #pairedReads 0
8 #properlyPairedReads 0 8 #properlyPairedReads 0
9 #readLengthAvg 9 #readLengthAvg 145.46
10 #properPairRate 0.0000 10 #properPairRate 0.0000
11 #totalQualityAvg 11 #totalQualityAvg 36.5800
12 #mapqAvg 12 #mapqAvg 43.35
13 #reference 13 #reference /home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta
14 #seqid source type start end score strand phase attributes 14 #seqid source type start end score strand phase attributes
15 NC_002945.4 . sequence_variant_obs 976327 976327 15 NC_002945.4 . sequence_variant_obs 976327 976327 0.87 + . ID=SUB T
16 NC_002945.4 . sequence_variant_obs 1501932 1501932 16 NC_002945.4 . sequence_variant_obs 1501932 1501932 0.92 + . ID=SUB C
17 NC_002945.4 . sequence_variant_obs 3380579 3380579 17 NC_002945.4 . sequence_variant_obs 3380579 3380579 0.92 + . ID=SUB G
18 NC_002945.4 . sequence_variant_obs 3646293 3646293 18 NC_002945.4 . sequence_variant_obs 3646293 3646293 0.89 + . ID=SUB A