Mercurial > repos > iuc > bbtools_callvariants

view test-data/cv_output.gff @ 11:3854db061e6e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 46992fbb9d79da3d3c45b0c10f2936cf2af2dbcd
author iuc
date Tue, 19 Nov 2024 14:47:48 +0000
parents 7e041c120b96
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##gff-version 3
#BBMapVersion	39.08
#ploidy	2
#rarity	1.00000
#minAlleleFraction	0.1000
#reads	2207
#pairedReads	0
#properlyPairedReads	0
#readLengthAvg	145.46
#properPairRate	0.0000
#totalQualityAvg	36.5800
#mapqAvg	43.35
#reference	/home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta
#seqid	source	type	start	end	score	strand	phase	attributes
NC_002945.4	.	sequence_variant_obs	976327	976327	0.87	+	.	ID=SUB T
NC_002945.4	.	sequence_variant_obs	1501932	1501932	0.92	+	.	ID=SUB C
NC_002945.4	.	sequence_variant_obs	3380579	3380579	0.92	+	.	ID=SUB G
NC_002945.4	.	sequence_variant_obs	3646293	3646293	0.89	+	.	ID=SUB A