Mercurial > repos > iuc > bbtools_tadpole

annotate test-data/cv_output.txt @ 9:51947de90615 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 4aa44523d9df9bf1773ed724735120476d773a19
author iuc
date Thu, 06 Mar 2025 11:52:05 +0000
parents 0ddf147d1897
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0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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1 #fileformat Var_1.3
0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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2 #BBMapVersion 39.08
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65f6a872ac7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f
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3 #ploidy 2
65f6a872ac7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f
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4 #rarity 1.00000
65f6a872ac7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f
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5 #minAlleleFraction 0.1000
65f6a872ac7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f
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6 #reads 2207
65f6a872ac7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f
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7 #pairedReads 0
65f6a872ac7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f
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8 #properlyPairedReads 0
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0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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9 #readLengthAvg 145.46
0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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10 #properPairRate 0.0000
0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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11 #totalQualityAvg 36.5800
0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
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12 #mapqAvg 43.35
0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
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13 #reference /home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta
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65f6a872ac7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit aca07f4e7d683d1b7d06abb63e05d4ff1b28771f
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14 #scaf start stop type call r1p r1m r2p r2m paired lengthSum mapq mapqMax baseq baseqMax edist edistMax id idMax cov minusCov nearbyVarCount flagged contigEndDist phredScore readCount alleleFraction revisedAF strandRatio baseqAvg mapqAvg edistAvg identityAvg edistScore identityScore qualityScore pairedScore biasScore coverageScore homopolymerScore score
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0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
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15 0 976326 976327 SUB T 2 0 0 0 0 292 77 40 48 24 111 65 1930 972 0 -1 0 0 0 22.21 2 1 1 0.5000 24 38.50 55.50 965 0.9972 0.9932 0.7489 0.9800 0.9737 0.7143 1 0.8725
0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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16 0 1501931 1501932 SUB C 0 2 0 0 0 292 88 44 64 39 74 38 1986 993 0 -1 0 0 0 27.20 2 1 1 0.5000 32 44 37 993 0.9851 0.9994 0.9831 0.9800 0.9737 0.7143 1 0.9202
0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
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17 0 3380578 3380579 SUB G 0 2 0 0 0 289 87 44 75 38 105 63 1986 993 0 -1 0 0 0 27.85 2 1 1 0.5000 37.50 43.50 52.50 993 0.9968 0.9994 0.9972 0.9800 0.9737 0.7143 1 0.9250
0ddf147d1897 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
diff changeset
18 0 3646292 3646293 SUB A 1 1 0 0 0 291 86 44 76 38 44 31 1986 993 0 -1 0 0 0 23.34 2 1 1 1 38 43 22 993 0.7996 0.9994 0.9975 0.9800 0.9747 0.7143 1 0.8853