diff README.md @ 4:7b10a015526e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 3edcac645f34d5a94884dedaf95c5774f4afc5c7
author iuc
date Sat, 11 Mar 2017 17:57:17 -0500
parents e58e34d48868
children
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--- a/README.md	Tue Jan 31 12:41:19 2017 -0500
+++ b/README.md	Sat Mar 11 17:57:17 2017 -0500
@@ -3,7 +3,7 @@
 Copied from branch bcftools1.2:
 
 This aims to be a "faithful" rendering of the bcftool suite. I.e. options are
-presented essentially as closely to the command line version as is useful. 
+presented essentially as closely to the command line version as is useful.
 
 This may not appeal to all, if you'd like to see smaller and more dedicated
 tools (e.g. "intersect", "union" and "complement" being separate tools instead
@@ -11,12 +11,12 @@
 
 Updated for bcftools v1.3
 
-This was extended from the bcftools1.2 branch then greatly hand edited to 
+This was extended from the bcftools1.2 branch then greatly hand edited to
 group params and manage param innteractions.
 
-In the macros.xml there are macros and tokens to handle file input and output.  
+In the macros.xml there are macros and tokens to handle file input and output.
 These use the datatypes currently available in galaxy: Vcf and Bcf
-The macros take care of bgzip and indexing of inputs.  
+The macros take care of bgzip and indexing of inputs.
 
 The convert command was split into 2 tools, "convert to vcf" and "convert from vcf"
 
@@ -27,7 +27,7 @@
 - cnv needs an input.vcf for testing, runs with bcftools cnv -s "HG00101" -o 'HG00101/' -p 5 mpileup.vcf
 - roh needs a more useful input.vcf for testing
 - plugin color chrs
-- plugin frameshifts 
+- plugin frameshifts
 
 ## Status