Mercurial > repos > iuc > bcftools_call

comparison test-data/mpileup.vcf @ 1:8959eda17fca draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:01:07 -0400
parents a531317a3527
children
comparison
equal deleted inserted replaced
0:a531317a3527 1:8959eda17fca
20 ##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling"> 20 ##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling">
21 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods"> 21 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
22 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Number of high-quality bases"> 22 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Number of high-quality bases">
23 ##FORMAT=<ID=DV,Number=1,Type=Integer,Description="Number of high-quality non-reference bases"> 23 ##FORMAT=<ID=DV,Number=1,Type=Integer,Description="Number of high-quality non-reference bases">
24 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00100 HG00101 HG00102 24 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00100 HG00101 HG00102
25 17 1 . A <X> 0 . DP=11;I16=11,0,0,0,452,18594,0,0,319,9251,0,0,223,4959,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 25 17 1 . A G,X,T,C 0 . DP=11;I16=11,0,0,0,452,18594,0,0,319,9251,0,0,223,4959,0,0;QS=1,1,0,1,1;MQ0F=0 PL:DP:DV 0,0,0,0,0,0,.,.,.,.,.,.,.,.,.:5:0 .:3:0 .:3:0
26 17 2 . A <X> 0 . DP=11;I16=11,0,0,0,439,17587,0,0,319,9251,0,0,226,5030,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 26 17 2 . A G,X,T,C 0 . DP=11;I16=11,0,0,0,452,18594,0,0,319,9251,0,0,223,4959,0,0;QS=1,1,0,1,1;MQ0F=0 PL:DP:DV 0,0,0,0,0,0,.,.,.,.,.,.,.,.,.:5:0 .:3:0 .:3:0
27 17 3 . G <X> 0 . DP=11;I16=11,0,0,0,431,16971,0,0,319,9251,0,0,229,5111,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 27 17 3 . A G,X,T,C 0 . DP=11;I16=11,0,0,0,452,18594,0,0,319,9251,0,0,223,4959,0,0;QS=1,1,0,1,1;MQ0F=0 PL:DP:DV 0,0,0,0,0,0,.,.,.,.,.,.,.,.,.:5:0 .:3:0 .:3:0
28 17 4 . C <X> 0 . DP=11;I16=11,0,0,0,423,16417,0,0,319,9251,0,0,232,5202,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,71:3:0 28 17 4 . A G,X,T,C 0 . DP=11;I16=11,0,0,0,452,18594,0,0,319,9251,0,0,223,4959,0,0;QS=1,1,0,1,1;MQ0F=0 PL:DP:DV 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15:5:0 .:3:0 .:3:0
29 17 5 . T <X> 0 . DP=11;I16=11,0,0,0,450,18520,0,0,319,9251,0,0,234,5252,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 29 17 5 . A X,G 0 . DP=11;I16=11,0,0,0,452,18594,0,0,319,9251,0,0,223,4959,0,0;QS=1,0,1;MQ0F=0 PL:DP:DV 0,0,0,0,0,0:5:0 .:3:0 .:3:0
30 17 6 . T <X> 0 . DP=11;I16=11,0,0,0,403,14847,0,0,319,9251,0,0,236,5310,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 30 17 6 . A X,G 0 . DP=11;I16=11,0,0,0,452,18594,0,0,319,9251,0,0,223,4959,0,0;QS=1,0,1;MQ0F=0 PL:DP:DV 0,0,0,0,0,0:5:0 .:3:0 .:3:0
31 17 7 . C <X> 0 . DP=11;I16=11,0,0,0,446,18114,0,0,319,9251,0,0,237,5327,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 31 17 7 . A X,G 0 . DP=11;I16=11,0,0,0,452,18594,0,0,319,9251,0,0,223,4959,0,0;QS=1,0,1;MQ0F=0 PL:DP:DV 1,2,3,4,5,6:5:0 .:3:0 .:3:0
32 17 8 . T <X> 0 . DP=11;I16=11,0,0,0,465,19677,0,0,319,9251,0,0,238,5354,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 32 17 8 . T <X> 0 . DP=11;I16=11,0,0,0,465,19677,0,0,319,9251,0,0,238,5354,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0
33 17 9 . C <X> 0 . DP=11;I16=11,0,0,0,447,18205,0,0,319,9251,0,0,239,5391,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 33 17 9 . C <X> 0 . DP=11;I16=11,0,0,0,447,18205,0,0,319,9251,0,0,239,5391,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0
34 17 10 . A <X> 0 . DP=11;I16=11,0,0,0,426,16756,0,0,319,9251,0,0,240,5438,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,69:3:0 34 17 10 . A <X> 0 . DP=11;I16=11,0,0,0,426,16756,0,0,319,9251,0,0,240,5438,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,69:3:0
35 17 11 . C <X> 0 . DP=11;I16=11,0,0,0,413,15603,0,0,319,9251,0,0,241,5495,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 35 17 11 . C <X> 0 . DP=11;I16=11,0,0,0,413,15603,0,0,319,9251,0,0,241,5495,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0
36 17 12 . C <X> 0 . DP=11;I16=11,0,0,0,438,17506,0,0,319,9251,0,0,242,5562,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0 36 17 12 . C <X> 0 . DP=11;I16=11,0,0,0,438,17506,0,0,319,9251,0,0,242,5562,0,0;QS=3,0;MQ0F=0 PL:DP:DV 0,15,100:5:0 0,9,72:3:0 0,9,72:3:0