Mercurial > repos > iuc > bcftools_call
comparison README.md @ 0:a531317a3527 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
| author | iuc |
|---|---|
| date | Mon, 02 May 2016 17:27:10 -0400 |
| parents | |
| children | 8959eda17fca |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:a531317a3527 |
|---|---|
| 1 # bcftools (v1.2) | |
| 2 | |
| 3 This aims to be a "faithful" rendering of the bcftool suite. I.e. options are | |
| 4 presented essentially as closely to the command line version as is useful. | |
| 5 | |
| 6 This may not appeal to all, if you'd like to see smaller and more dedicated | |
| 7 tools (e.g. "intersect", "union" and "complement" being separate tools instead | |
| 8 of all of them included in the "isec" tool,) please feel free to file an issue. | |
| 9 | |
| 10 ## TODO: | |
| 11 | |
| 12 - Galaxy needs datatypes for bcf and vcf files, block-gzipped and uncompressed. | |
| 13 - Galaxy needs to automatically index those files with tabix | |
| 14 | |
| 15 ## "Complete" Wrappers | |
| 16 | |
| 17 The wrappers were automatically generated in bulk. That doesn't get them 100% | |
| 18 of the way there (e.g. meaningful test cases), so the rest of the process is a | |
| 19 bit slower. | |
| 20 | |
| 21 - bcftools call |