diff test-data/annotate2.vcf @ 1:8959eda17fca draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:01:07 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotate2.vcf	Wed Jul 06 07:01:07 2016 -0400
@@ -0,0 +1,17 @@
+##fileformat=VCFv4.1
+##contig=<ID=1,assembly=b37,length=249250621>
+##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
+##INFO=<ID=FLAG,Number=0,Type=Flag,Description="Test type">
+##INFO=<ID=IINT,Number=1,Type=Integer,Description="Test type">
+##INFO=<ID=IFLT,Number=1,Type=Float,Description="Test type">
+##INFO=<ID=ISTR,Number=1,Type=String,Description="Test type">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=FINT,Number=1,Type=Integer,Description="Test type">
+##FORMAT=<ID=FFLT,Number=1,Type=Float,Description="Test type">
+##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test type">
+##FILTER=<ID=q11,Description="Quality below 10">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	B	C
+1	3000001	xx	C	T	11	PASS	FLAG;IINT=11;IFLT=1.1;ISTR=xxx	GT:FINT:FFLT:FSTR	0/0:11:1.1:xxx	0/0:11:1.1:x	0/0:11:1.1:x
+1	3000002	.	C	T	.	.	.	GT	.	.	.
+1	3000003	xx	C	T	11	q11	FLAG;IINT=.;IFLT=.;ISTR=.	GT:FINT:FFLT:FSTR	0/0:.:.:.	0/0:.:.:.	0/0:.:.:.
+1	3000004	xx	C	T	11	q11	FLAG;IINT=11;IFLT=1.1;ISTR=xxx	GT:FINT:FFLT:FSTR	0/0:11:1.1:x	0/0:11:1.1:xxx	0/0:11:1.1:xxx