Mercurial > repos > iuc > bcftools_call
diff test-data/annotate2.vcf @ 1:8959eda17fca draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
| author | iuc |
|---|---|
| date | Wed, 06 Jul 2016 07:01:07 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/annotate2.vcf Wed Jul 06 07:01:07 2016 -0400 @@ -0,0 +1,17 @@ +##fileformat=VCFv4.1 +##contig=<ID=1,assembly=b37,length=249250621> +##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta +##INFO=<ID=FLAG,Number=0,Type=Flag,Description="Test type"> +##INFO=<ID=IINT,Number=1,Type=Integer,Description="Test type"> +##INFO=<ID=IFLT,Number=1,Type=Float,Description="Test type"> +##INFO=<ID=ISTR,Number=1,Type=String,Description="Test type"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=FINT,Number=1,Type=Integer,Description="Test type"> +##FORMAT=<ID=FFLT,Number=1,Type=Float,Description="Test type"> +##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test type"> +##FILTER=<ID=q11,Description="Quality below 10"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B C +1 3000001 xx C T 11 PASS FLAG;IINT=11;IFLT=1.1;ISTR=xxx GT:FINT:FFLT:FSTR 0/0:11:1.1:xxx 0/0:11:1.1:x 0/0:11:1.1:x +1 3000002 . C T . . . GT . . . +1 3000003 xx C T 11 q11 FLAG;IINT=.;IFLT=.;ISTR=. GT:FINT:FFLT:FSTR 0/0:.:.:. 0/0:.:.:. 0/0:.:.:. +1 3000004 xx C T 11 q11 FLAG;IINT=11;IFLT=1.1;ISTR=xxx GT:FINT:FFLT:FSTR 0/0:11:1.1:x 0/0:11:1.1:xxx 0/0:11:1.1:xxx