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comparison test-data/csq.gff3 @ 5:062bd8cf085e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:44:51 -0400
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4:801a440c28cc 5:062bd8cf085e
1 ##gff-version 3
2 #! This file shows which fields are used and required by `bcftools +csq`. It is a trimmed version
3 #! of the GFF3 format, see an example of the full format here
4 #! ftp://ftp.ensembl.org/pub/grch37/release-84/gff3/homo_sapiens/
5 #!
6 ###
7 1 . gene 90 200 . + . ID=gene:ENSG00000000001;Name=XYZ;biotype=protein_coding
8 1 . transcript 90 200 . + . ID=transcript:ENST00000000001;Parent=gene:ENSG00000000001;biotype=protein_coding
9 1 . exon 90 110 . + . Parent=transcript:ENST00000000001
10 1 . five_prime_UTR 90 98 . + . Parent=transcript:ENST00000000001
11 1 . CDS 99 110 . + 1 Parent=transcript:ENST00000000001
12 1 . exon 120 130 . + . Parent=transcript:ENST00000000001
13 1 . CDS 120 130 . + 1 Parent=transcript:ENST00000000001
14 1 . exon 140 150 . + . Parent=transcript:ENST00000000001
15 1 . CDS 140 150 . + 2 Parent=transcript:ENST00000000001
16 1 . exon 160 200 . + . Parent=transcript:ENST00000000001
17 1 . CDS 160 171 . + 0 Parent=transcript:ENST00000000001
18 1 . three_prime_UTR 172 200 . + . Parent=transcript:ENST00000000001
19 2 . gene 80 200 . - . ID=gene:ENSG00000000002;Name=ABC;biotype=protein_coding
20 2 . transcript 80 200 . - . ID=transcript:ENST00000000002;Parent=gene:ENSG00000000002;biotype=protein_coding
21 2 . exon 80 110 . - . Parent=transcript:ENST00000000002
22 2 . three_prime_UTR 80 98 . - . Parent=transcript:ENST00000000002
23 2 . CDS 99 110 . - 0 Parent=transcript:ENST00000000002
24 2 . exon 120 130 . - . Parent=transcript:ENST00000000002
25 2 . CDS 120 130 . - 2 Parent=transcript:ENST00000000002
26 2 . exon 140 150 . - . Parent=transcript:ENST00000000002
27 2 . CDS 140 150 . - 1 Parent=transcript:ENST00000000002
28 2 . exon 160 200 . - . Parent=transcript:ENST00000000002
29 2 . CDS 160 171 . - 1 Parent=transcript:ENST00000000002
30 2 . five_prime_UTR 172 200 . - . Parent=transcript:ENST00000000002
31 3 . lincRNA_gene 20 50 . - . ID=gene:ENSG00000000004;Name=mir-007;biotype=lincRNA
32 3 . lincRNA 20 50 . - . ID=transcript:ENSG00000000004;Parent=gene:ENSG00000000004;biotype=lincRNA
33 3 . gene 100 200 . - . ID=gene:ENSG00000000003;Name=QWRTY;biotype=protein_coding
34 3 . transcript 100 200 . - . ID=transcript:ENST00000000003;Parent=gene:ENSG00000000003;biotype=protein_coding
35 3 . exon 100 110 . - . Parent=transcript:ENST00000000003
36 3 . three_prime_UTR 100 105 . - . Parent=transcript:ENST00000000003
37 3 . CDS 106 110 . - 0 Parent=transcript:ENST00000000003
38 3 . exon 160 200 . - . Parent=transcript:ENST00000000003
39 3 . CDS 160 171 . - 0 Parent=transcript:ENST00000000003
40 3 . five_prime_UTR 172 200 . - . Parent=transcript:ENST00000000003