Mercurial > repos > iuc > bcftools_cnv

comparison bcftools_cnv.xml @ 20:143796b504eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit bfc4ff4956b94885638ae07a2560bac5f84fcca8
author iuc
date Tue, 16 Jul 2024 17:13:37 +0000
parents 3a7084316a6e
children ccb83bf54de0
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19:6d35a3780bfd 20:143796b504eb
179 help="Expected BAF deviation in the control sample (default: 0.04)" /> 179 help="Expected BAF deviation in the control sample (default: 0.04)" />
180 <param name="baf_weight" type="hidden" value="1" /> 180 <param name="baf_weight" type="hidden" value="1" />
181 <param name="lrr_weight" type="hidden" value="0" /> 181 <param name="lrr_weight" type="hidden" value="0" />
182 </when> 182 </when>
183 </conditional> 183 </conditional>
184 <param argument="--err-prob" name="err_prob" type="float" value="1e-4" label="Err Prob" help="Uniform error probability" /> 184 <param argument="--err-prob" type="float" value="1e-4" label="Err Prob" help="Uniform error probability" />
185 <param argument="--same-prob" name="same_prob" type="float" value="0.5" min="0" max="1" label="Same Prob"> 185 <param argument="--same-prob" type="float" value="0.5" min="0" max="1" label="Same Prob">
186 <help> 186 <help>
187 The prior probability of the query and the control sample being the same. 187 The prior probability of the query and the control sample being the same.
188 Setting to 0 calls both independently, setting to 1 forces the same copy number state in both. (default: 0.5) 188 Setting to 0 calls both independently, setting to 1 forces the same copy number state in both. (default: 0.5)
189 </help> 189 </help>
190 </param> 190 </param>
191 <param argument="--xy-prob" name="xy_prob" type="float" min="0." max="1." label="Xy Prob" value="1e-9"> 191 <param argument="--xy-prob" type="float" min="0." max="1." label="Xy Prob" value="1e-9">
192 <help> 192 <help>
193 The HMM probability of transition to another copy number state. 193 The HMM probability of transition to another copy number state.
194 Increasing this value leads to smaller and more frequent calls. 194 Increasing this value leads to smaller and more frequent calls.
195 </help> 195 </help>
196 </param> 196 </param>