Mercurial > repos > iuc > bcftools_cnv

comparison bcftools_cnv.xml @ 16:3a7084316a6e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit db275932cbb485cb44ae91e0b421d6f57698db49
author iuc
date Tue, 20 Sep 2022 12:58:03 +0000
parents 8d637025a905
children 143796b504eb
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15:8627b2b383b4 16:3a7084316a6e
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
3 <description>Call copy number variation from VCF B-allele frequency (BAF) and Log R Ratio intensity (LRR) values</description> 3 <description>Call copy number variation from VCF B-allele frequency (BAF) and Log R Ratio intensity (LRR) values</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">cnv</token> 5 <token name="@EXECUTABLE@">cnv</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
229 <conditional name="score_usage"> 229 <conditional name="score_usage">
230 <param name="compute_on" value="baf" /> 230 <param name="compute_on" value="baf" />
231 </conditional> 231 </conditional>
232 <output name="output_summary" file="cnv_summary.tab" compare="re_match" /> 232 <output name="output_summary" file="cnv_summary.tab" compare="re_match" />
233 </test> 233 </test>
234 <!-- Test region overlap option -->
235 <test expect_num_outputs="3">
236 <param name="input_file" ftype="vcf" value="cnv.vcf" />
237 <section name="sec_restrict">
238 <param name="regions_overlap" value="1"/>
239 </section>
240 <output name="output_summary" file="cnv_summary.tab" compare="re_match" />
241 <assert_command>
242 <has_text text="--regions-overlap" />
243 </assert_command>
244 </test>
234 </tests> 245 </tests>
235 <help><![CDATA[ 246 <help><![CDATA[
236 ===================================== 247 =====================================
237 bcftools @EXECUTABLE@ 248 bcftools @EXECUTABLE@
238 ===================================== 249 =====================================