Mercurial > repos > iuc > bcftools_concat
comparison bcftools_concat.xml @ 2:50ff4b18319c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 44bebb8a97d64015cbba59f0663e2541035112b6
author | iuc |
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date | Mon, 03 Oct 2016 12:17:31 -0400 |
parents | dda05d07d7d4 |
children | 3b318cfab085 |
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1:c61d9e5366ec | 2:50ff4b18319c |
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1 <?xml version='1.0' encoding='utf-8'?> | 1 <?xml version='1.0' encoding='utf-8'?> |
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0"> | 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1"> |
3 <description>Concatenate or combine VCF/BCF files</description> | 3 <description>Concatenate or combine VCF/BCF files</description> |
4 <macros> | 4 <macros> |
5 <token name="@EXECUTABLE@">concat</token> | 5 <token name="@EXECUTABLE@">concat</token> |
6 <import>macros.xml</import> | 6 <import>macros.xml</import> |
7 </macros> | 7 </macros> |
69 </conditional> | 69 </conditional> |
70 <param name="ligate" type="boolean" truevalue="--ligate" falsevalue="" label="Ligate" | 70 <param name="ligate" type="boolean" truevalue="--ligate" falsevalue="" label="Ligate" |
71 help="Ligate phased VCFs by matching phase at overlapping haplotypes" /> | 71 help="Ligate phased VCFs by matching phase at overlapping haplotypes" /> |
72 <param name="compact_PS" type="boolean" truevalue="--compact-PS" falsevalue="" label="Compact Ps" | 72 <param name="compact_PS" type="boolean" truevalue="--compact-PS" falsevalue="" label="Compact Ps" |
73 help="Do not output PS tag at each site, only at the start of a new phase set block." /> | 73 help="Do not output PS tag at each site, only at the start of a new phase set block." /> |
74 <param name="min_PQ" type="integer" label="Min Pq" default="30" optional="True" | 74 <param name="min_PQ" type="integer" label="Min Pq" value="30" optional="True" |
75 help="Break phase set if phasing quality is lower than <int>" /> | 75 help="Break phase set if phasing quality is lower than <int>" /> |
76 </section> | 76 </section> |
77 <expand macro="macro_select_output_type" /> | 77 <expand macro="macro_select_output_type" /> |
78 </inputs> | 78 </inputs> |
79 <outputs> | 79 <outputs> |