# HG changeset patch
# User iuc
# Date 1475511451 14400
# Node ID 50ff4b18319cb33a61c434fff8290f04f975cd65
# Parent  c61d9e5366ec79a3c3fee0da435d474b2b76a996
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 44bebb8a97d64015cbba59f0663e2541035112b6

diff -r c61d9e5366ec -r 50ff4b18319c bcftools_concat.xml
--- a/bcftools_concat.xml	Wed Jul 13 10:56:21 2016 -0400
+++ b/bcftools_concat.xml	Mon Oct 03 12:17:31 2016 -0400
@@ -1,5 +1,5 @@
 <?xml version='1.0' encoding='utf-8'?>
-<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0">
+<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1">
     <description>Concatenate or combine VCF/BCF files</description>
     <macros>
         <token name="@EXECUTABLE@">concat</token>
@@ -71,7 +71,7 @@
                    help="Ligate phased VCFs by matching phase at overlapping haplotypes" />
             <param name="compact_PS" type="boolean" truevalue="--compact-PS" falsevalue="" label="Compact Ps" 
                    help="Do not output PS tag at each site, only at the start of a new phase set block." />
-            <param name="min_PQ" type="integer" label="Min Pq" default="30" optional="True" 
+            <param name="min_PQ" type="integer" label="Min Pq" value="30" optional="True" 
                    help="Break phase set if phasing quality is lower than &lt;int&gt;" />
         </section>
         <expand macro="macro_select_output_type" />
diff -r c61d9e5366ec -r 50ff4b18319c macros.xml
--- a/macros.xml	Wed Jul 13 10:56:21 2016 -0400
+++ b/macros.xml	Mon Oct 03 12:17:31 2016 -0400
@@ -339,7 +339,6 @@
         </when>
         <when value="targets_file">
             <expand macro="macro_targets_file">
-               <optional>true</optional>
             </expand>
         </when>
     </conditional>