Mercurial > repos > iuc > bcftools_convert_from_vcf

annotate test-data/consensus.vcf @ 9:aefb8d6348fb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 942ca2971ae6a72e548fde6186c6408a1e236653
author iuc
date Mon, 29 Jul 2019 18:05:01 -0400
parents 16f221807ecd
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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1 ##fileformat=VCFv4.2
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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2 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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3 ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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4 ##ALT=<ID=DEL,Description="Deletion">
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA001
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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6 1 5 . C a . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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7 1 5 . C t . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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8 1 7 . T a . PASS . GT .
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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9 1 10 . G a . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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10 1 12 . GACA ga . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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11 1 16 . T taaa . PASS . GT 1/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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12 1 19 . A c . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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13 1 61 . C a . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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14 2 61 . AGAG aa . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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15 2 119 . AAA t . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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16 2 179 . G gacgtacgt . PASS . GT 0/1
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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17 2 200 . A <DEL> . PASS END=210 GT 1/0
16f221807ecd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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18 2 481 . T c,a . PASS . GT 0/2