Mercurial > repos > iuc > bcftools_convert_from_vcf

diff bcftools_convert_from_vcf.xml @ 20:d58d2e8c7a57 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit bfc4ff4956b94885638ae07a2560bac5f84fcca8
author iuc
date Tue, 16 Jul 2024 17:00:03 +0000
parents 9b29129fb491
children 012656fd329f
line wrap: on
line diff
--- a/bcftools_convert_from_vcf.xml	Thu Jan 12 15:40:23 2023 +0000
+++ b/bcftools_convert_from_vcf.xml	Tue Jul 16 17:00:03 2024 +0000
@@ -145,7 +145,7 @@
         <data name="output_samples" format="tabular" label="${input_file.name.rsplit('.',1)[0]}.samples"/>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="input_file" ftype="vcf" value="convert.vcf" />
             <param name="convert_to"  value="gen_sample" />
             <output name="output_gen">
@@ -159,7 +159,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="input_file" ftype="vcf" value="convert.vcf" />
             <param name="convert_to"  value="gen_sample" />
             <param name="tag"  value="GP" />
@@ -170,7 +170,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="input_file" ftype="vcf" value="check.vcf" />
             <param name="convert_to"  value="gen_sample" />
             <param name="tag"  value="GT" />
@@ -182,7 +182,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="input_file" ftype="vcf" value="convert.vcf" />
             <param name="convert_to"  value="hap_sample" />
             <output name="output_hap">
@@ -191,7 +191,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="input_file" ftype="vcf" value="convert.vcf" />
             <param name="convert_to"  value="hap_legend_sample" />
             <output name="output_hap">
@@ -212,7 +212,7 @@
             </output>
         </test>
         <!-- Test keep-duplicates option -->
-        <test>
+        <test expect_num_outputs="3">
             <param name="input_file" ftype="vcf" value="convert.vcf" />
             <param name="convert_to"  value="hap_legend_sample" />
             <param name="keep_duplicates" value="true"/>
@@ -237,7 +237,7 @@
             </assert_command>
         </test>
         <!-- Test region overlap -->
-        <test>
+        <test expect_num_outputs="2">
             <param name="input_file" ftype="vcf" value="convert.vcf" />
             <param name="convert_to"  value="gen_sample" />
             <section name="sec_restrict">