Mercurial > repos > iuc > bcftools_convert_to_vcf

comparison bcftools_convert_to_vcf.xml @ 4:19167fd970a3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 3edcac645f34d5a94884dedaf95c5774f4afc5c7
author iuc
date Sat, 11 Mar 2017 17:58:54 -0500
parents d6e3d97e17f0
children 7b50ab23976c
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3:d6e3d97e17f0 4:19167fd970a3
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@ to vcf" id="bcftools_@EXECUTABLE@_to_vcf" version="@VERSION@.0"> 2 <tool name="bcftools @EXECUTABLE@ to vcf" id="bcftools_@EXECUTABLE@_to_vcf" version="@VERSION@">
3 <description>Converts other formats to VCF/BCFk</description> 3 <description>Converts other formats to VCF/BCFk</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">convert</token> 5 <token name="@EXECUTABLE@">convert</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
8 <expand macro="requirements" /> 8 <expand macro="requirements">
9 <requirement type="package" version="1.3.1">samtools</requirement>
10 </expand>
9 <expand macro="version_command" /> 11 <expand macro="version_command" />
10 <command detect_errors="aggressive"><![CDATA[ 12 <command detect_errors="aggressive"><![CDATA[
11 @PREPARE_ENV@ 13 @PREPARE_ENV@
12 #set $input_vcf = None 14 #set $input_vcf = None
13 #if $convert.convert_from == 'gvcf': 15 #if $convert.convert_from == 'gvcf':