Mercurial > repos > iuc > bcftools_convert_to_vcf
view test-data/csq.gff3 @ 11:8bb5efd7a3dd draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 8f3fe2272c80fdb749db49be689681e4d1391bee"
| author | iuc |
|---|---|
| date | Wed, 25 Dec 2019 12:25:07 -0500 |
| parents | 7b50ab23976c |
| children |
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##gff-version 3 #! This file shows which fields are used and required by `bcftools +csq`. It is a trimmed version #! of the GFF3 format, see an example of the full format here #! ftp://ftp.ensembl.org/pub/grch37/release-84/gff3/homo_sapiens/ #! ### 1 . gene 90 200 . + . ID=gene:ENSG00000000001;Name=XYZ;biotype=protein_coding 1 . transcript 90 200 . + . ID=transcript:ENST00000000001;Parent=gene:ENSG00000000001;biotype=protein_coding 1 . exon 90 110 . + . Parent=transcript:ENST00000000001 1 . five_prime_UTR 90 98 . + . Parent=transcript:ENST00000000001 1 . CDS 99 110 . + 1 Parent=transcript:ENST00000000001 1 . exon 120 130 . + . Parent=transcript:ENST00000000001 1 . CDS 120 130 . + 1 Parent=transcript:ENST00000000001 1 . exon 140 150 . + . Parent=transcript:ENST00000000001 1 . CDS 140 150 . + 2 Parent=transcript:ENST00000000001 1 . exon 160 200 . + . Parent=transcript:ENST00000000001 1 . CDS 160 171 . + 0 Parent=transcript:ENST00000000001 1 . three_prime_UTR 172 200 . + . Parent=transcript:ENST00000000001 2 . gene 80 200 . - . ID=gene:ENSG00000000002;Name=ABC;biotype=protein_coding 2 . transcript 80 200 . - . ID=transcript:ENST00000000002;Parent=gene:ENSG00000000002;biotype=protein_coding 2 . exon 80 110 . - . Parent=transcript:ENST00000000002 2 . three_prime_UTR 80 98 . - . Parent=transcript:ENST00000000002 2 . CDS 99 110 . - 0 Parent=transcript:ENST00000000002 2 . exon 120 130 . - . Parent=transcript:ENST00000000002 2 . CDS 120 130 . - 2 Parent=transcript:ENST00000000002 2 . exon 140 150 . - . Parent=transcript:ENST00000000002 2 . CDS 140 150 . - 1 Parent=transcript:ENST00000000002 2 . exon 160 200 . - . Parent=transcript:ENST00000000002 2 . CDS 160 171 . - 1 Parent=transcript:ENST00000000002 2 . five_prime_UTR 172 200 . - . Parent=transcript:ENST00000000002 3 . lincRNA_gene 20 50 . - . ID=gene:ENSG00000000004;Name=mir-007;biotype=lincRNA 3 . lincRNA 20 50 . - . ID=transcript:ENSG00000000004;Parent=gene:ENSG00000000004;biotype=lincRNA 3 . gene 100 200 . - . ID=gene:ENSG00000000003;Name=QWRTY;biotype=protein_coding 3 . transcript 100 200 . - . ID=transcript:ENST00000000003;Parent=gene:ENSG00000000003;biotype=protein_coding 3 . exon 100 110 . - . Parent=transcript:ENST00000000003 3 . three_prime_UTR 100 105 . - . Parent=transcript:ENST00000000003 3 . CDS 106 110 . - 0 Parent=transcript:ENST00000000003 3 . exon 160 200 . - . Parent=transcript:ENST00000000003 3 . CDS 160 171 . - 0 Parent=transcript:ENST00000000003 3 . five_prime_UTR 172 200 . - . Parent=transcript:ENST00000000003